Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0159 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCAGAAGAAGGCTCAATCAGATGGTGCAACGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTTGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCGAACTCGCATTCACAGTCGCAGACTCCATTAGTTGCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGTCTCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTAAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCAAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCCAAAATTGCAAGCAGTCCTCATGGGATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATATTGGGTAAGCACAACAAAGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGTGAGTGTTTCCAGGCCAACATTCTTTGCTCCGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAACATGGCATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGGCCGACAGCCAAGGACCTATCCACTCATAGACCAGTGCCATTTCAACAGGCAAATCATGTCAGAGCCACTGTTCCTCCACTACCATCCTTCCCCATTGCTGGTGTTGGAAGCCCGTCTTTGTTGGGTCCCTCAAAGTTTACATATAGGTCTTTAATGGCAGATATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCTACCGAAAAGCAAGCTGATTGTCAGACAGAAACTTCTGTTGCATCATCCACTCAAGACAGGTTGCAGAAAAAAGATGCATCGGATGAGAAGGCTGCCGCCGATGATCATTCAAGTGCAAACCAGGCTGATAAAACCACCCCTGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCTCCCGGAACTTTAGCGTTGATGTGCGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAATGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTAACGAAGTTTCGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAAACCCAGTGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACACCAAGTCAACAATGGCACTACTAATTCTAGAACTGAAACTCAAACTCATTTGGTCCAACAAAACAATAAAGTTACGAAATCTTCGATTCCACCGTTGGGGAAGACAACGCAGACGGTAACTGCAGCAGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1770 45.65 MGEEDSAGAPQKKAQSDGATLSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQTPLVAQNLQQAQPKPQSQMVAASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTHRPVPFQQANHVRATVPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQTETSVASSTQDRLQKKDASDEKAAADDHSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEHQVNNGTTNSRTETQTHLVQQNNKVTKSSIPPLGKTTQTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1354511 1358488 + Tan0013161.1 Tan08g0159 760051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0159 589 PANTHER TESMIN/TSO1-RELATED 21 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Tan08g0159 589 MobiDBLite consensus disorder prediction 44 78 - -
Tan08g0159 589 MobiDBLite consensus disorder prediction 375 400 - -
Tan08g0159 589 MobiDBLite consensus disorder prediction 401 417 - -
Tan08g0159 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Tan08g0159 589 MobiDBLite consensus disorder prediction 1 78 - -
Tan08g0159 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Tan08g0159 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Tan08g0159 589 MobiDBLite consensus disorder prediction 375 448 - -
Tan08g0159 589 MobiDBLite consensus disorder prediction 524 543 - -
Tan08g0159 589 MobiDBLite consensus disorder prediction 13 32 - -
Tan08g0159 589 SMART CXC_2 117 157 IPR033467 -
Tan08g0159 589 SMART CXC_2 202 243 IPR033467 -
Tan08g0159 589 MobiDBLite consensus disorder prediction 418 432 - -
Tan08g0159 589 MobiDBLite consensus disorder prediction 91 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0159 Tan-Chr8:1354511 Tan10g0801 Tan-Chr10:6724208 4.00E-30 dispersed
Tan08g0159 Tan-Chr8:1354511 Tan09g1264 Tan-Chr9:64953195 5.10E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28076 PF03638 TCR 3.10E-12 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0159 - - - 0.0