Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0168 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCTCCGGCGACCAATACGACGTCTCCCCCGCCGGCAACCCCCAGTGCTCCGCCGCCATCGACTCCATCGCAGCCGCCGCCGGCCGCTACACCTCCACCAACAACCACTCCGCCTTCCGCTGCAACCCCGCCCACTCCTTCCCGGCCTCCGCCGACCTCCGCCCCACCTCCGGCCACCCCGTCTCCGCCACCGCCGGTTACTCCCCAACCCGCCCCGCCCACTGACTCTCCCTCGCCGCCGGCTTCCTCTCCTCCGCCGTCTACGCCATCTACTCCCTCAATCTCTCCGCCGCCTCCGTCTTCTACTAGCCCTCCGTCTCCTCCGGCCGGTCGCAGTCCGCCTCCTCCGACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCCCCGCCTCCATCAACTTCATCGCCATCGCCGCCGTCCTCCTCGTCCTCGTCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTGATAATTGTTCTTTTGCTTAGTATACTGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGCGATGAAGAAGGATTCTATCCACACCCTCCGCCTGGACCAAAAGTTGATCCTTATGGTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTGCCGCCCGATCCTGTAGTTGGAATGGTGCCTAAGCCATCTCCTCCTCCAGCAGTTGCATCCCGACCCCCGCACTCTCCAACTGGCGCTCGGCCTCCGCCTCCACAGCTCTACATGAGTAGTAGTGGAGGTTCAGGCTCTATGTATTCTGGGCCTGAAAATCCACTCCCTCCACCACCTCCGCCTCCTATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCAACGGATGGATTTTCAGATGCCAATCTCCTTGGACAAGGCGGATTCGGATATGTGCATAGAGGGGTACTTCCTAATGGAAAGGAGGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGAGAACGAGAGTTTCAGGCCGAAGTCGATATTATCAGTCGAGTTCACCATAAACATCTTGTTTCTTTGGTCGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAATTTGTTCCAAACAATACCTTGGAGTTTCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTAGAATCGCTTTAGGATCTGCAAAAGGACTAGCTTATCTTCACGAAGATTGTCACCCAAAAATTATTCATCGCGATATTAAAGCCGCTAACATACTGTTGGACTTCAAGTTTGAAACAAAGGTTGCTGATTTTGGACTTGCAAAGTTTTCTTCTGATGTCAATACCCATGTATCGACTCGAGTGATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTCGATACGAGTAATACTTTCATGGAAGATAGTCTTGTAGACTGGGCTAGGCCGTTATTGAACCGAGCTCTAGAAGATGGAAACTTTGATGCTTTGATCGATCCAAGGATTCAAAACAACTACAACCACAATGAAATGGCTCGTATGGTTGAGTGTGCTGCTGCCTGTGTGCGACATTCTGCAAGGCGTCGACCCCGAATGAGCCAGGTAAATTAG 1728 52.6 MSTPTPAPTSPPATNTTSPPPATPSAPPPSTPSQPPPAATPPPTTTPPSAATPPTPSRPPPTSAPPPATPSPPPPVTPQPAPPTDSPSPPASSPPPSTPSTPSISPPPPSSTSPPSPPAGRSPPPPTSRTPSTPSRSPPPPSTSSPSPPSSSSSSNISTGLVVGIAIGGVIIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYGGQQQWQHNAPLPPDPVVGMVPKPSPPPAVASRPPHSPTGARPPPPQLYMSSSGGSGSMYSGPENPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFETKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDALIDPRIQNNYNHNEMARMVECAAACVRHSARRRPRMSQVN 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1415873 1419890 - Tan0018070.3 Tan08g0168 760060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0168 575 FunFam proline-rich receptor-like protein kinase PERK1 283 380 - -
Tan08g0168 575 MobiDBLite consensus disorder prediction 272 286 - -
Tan08g0168 575 FunFam Proline-rich receptor-like protein kinase PERK1 381 575 - -
Tan08g0168 575 MobiDBLite consensus disorder prediction 1 147 - -
Tan08g0168 575 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524(InterPro)
Tan08g0168 575 CDD STKc_IRAK 311 574 - -
Tan08g0168 575 Pfam Protein tyrosine and serine/threonine kinase 310 574 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0168 575 SMART serkin_6 305 541 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0168 575 MobiDBLite consensus disorder prediction 224 254 - -
Tan08g0168 575 MobiDBLite consensus disorder prediction 1 156 - -
Tan08g0168 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0168 575 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 126 574 IPR047117 -
Tan08g0168 575 SUPERFAMILY Protein kinase-like (PK-like) 280 574 IPR011009 -
Tan08g0168 575 ProSiteProfiles Protein kinase domain profile. 305 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0168 575 Gene3D Transferase(Phosphotransferase) domain 1 381 575 - -
Tan08g0168 575 Gene3D Phosphorylase Kinase; domain 1 284 380 - -
Tan08g0168 575 MobiDBLite consensus disorder prediction 189 288 - -
Tan08g0168 575 PRINTS Proline rich extensin signature 4 20 - -
Tan08g0168 575 PRINTS Proline rich extensin signature 24 41 - -
Tan08g0168 575 PRINTS Proline rich extensin signature 49 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0168 Tan-Chr8:1415873 Tan09g1285 Tan-Chr9:65032981 8.30E-158 dispersed
Tan08g0167 Tan-Chr8:1415873 Tan08g0168 Tan-Chr8:1415873 5.10E-223 tandem
Tan08g0168 Tan-Chr8:1415873 Tan08g0169 Tan-Chr8:1416059 5.70E-223 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67912 PF07714 PK_Tyr_Ser-Thr 3.10E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0168 - - - 0.0