Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0179 ATGAAGAGCGATATCCATTTCAACATTCATTTTTTGCTTCAAATTTTCCTCTTCTTTGGCACTCTTTTGTGCCTAGCTTCTTCTGAAGAGTTTCTTCAAGTTTCCGGCTATGGAGGCGGAGGCGGCGGTAGAGGACTGACCGACGCTGAAGCTCACTACATCCGTCAACGGCAACTTCTTTACTACAGAGACGAATTCGGCGACCGTGGTGAAGAAGTCACCGTCGATCCTAAGCTAGTTTTTGAAAACGACAGAATCAGAAATGCTTATATAGCATTACAAGCTTGGAAGCAAGCGATTCTCTCTGACCCTTTGAATCTCACTCGTAATTGGGTTGGATCTAATGTTTGCAGCTACAAAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGTTACTTGCCGGAGGAGCTCGGCCTTCTTGTGGATCTTGCATTGTTCCATATCAACTCCAATCGGTTCTGCGGCACTGTTCCTCACAAGTTTAAGCACTTGAAGATGCTGTTCGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTCGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGATTCAATGAGTTCGAAGGGACTGTTCCGAAGGAGCTTTTCGACAAGGATTTGGACGCCATTTTCATCAACCACAACAGATTCCGGTTTGACTTGCCCGAAAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAACAAATTTCACGGCTGTGTTCCGGGAAGTATTGGGAATATGACGAGGTTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTTGATGTGAGCTATAATGAGTTTTTAGGGCCGTTGCCGGAGACGATTGGCGGAATGGTGAGCTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGAATAGTATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTATTCGTATAATTTCTTCACGGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGGAACTGTCTACCGGACCGGCCGGCGCAGCGGTCGGAGAGGCAATCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCGTCTCCGCCACCTGTTGTTGTTCCATCTCCGCCGCCACCTGTTTACTCACCTCCGCCACCTGTTTCCGCTTCACACCCCATTTACCGACCACGTTCTCCTCCACCGCCGTCTCCCTCTCCCCCTCCCCCGCCTGTTTACTCTCCTCCCCCGCCCCCGCCTTCCCCACCGCCGCCTTCACCCCCACCGCCACCGCCGCCTGTCTACTCCCCACCCCACCTCCCCTTCTCCTCCCCCCGCCTTCTCCGCCACCGCCTTCCCCACCACCACCCCCACCCCCACCGCCGCCCCCACCAGTTTACTCTCCACCCCCACCCCCACCATCTCCACCGCCGCCCTCACCCCCACCGCCAGTTTACTCTCCACCCCACCTCCTCCTCCCTCACCTCCGCCGCCATCTCCTCCTCCCCCCAACACCGCCGCCACCAGCGCCGGTGTATTGTGTCCGACCTTCACCACCACCGCCACCACCAAACTCACCCCCACCACCTCCATTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCACCGCCCAACTCTCCACCACCCCCACCAATGTACTCTCCTCCGCCACCGCCTCACTCACCTCCTCCTCCACCGCATTCACCACCACCGCCAATCTATCCTTACTTATCTCCCCCACCTCCTCCACCAGTCTATTCCCCACCTCCACCGGTCTATTCACCGCCACCACCACCGCCGTGTATAGAGCCTCCCCCACCACCCCCGCCGCCGTGTATAGAGTATCATGAACCCCCACCGCCACCATCCCCATCACCACCGCCGCCCATCCAGTACCTTCCTCCGCCGTCTCCTTCACCCCCACCTCCACCGCCGCCACCCACCCCAGTTTACTATTCACCTCCTCCGCCAGTTTATTACTCCCCACCACCACCGTCACCATCGCCGCCCCCGCCGGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA 2259 55.82 MKSDIHFNIHFLLQIFLFFGTLLCLASSEEFLQVSGYGGGGGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTRNWVGSNVCSYKGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPAEIGLLKNLTVFDVSYNEFLGPLPETIGGMVSLEQLNVAHNFLSGKIPNSICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPDRPAQRSERQSCGLQFFWMSFLCCSVATCGGAVSATCCCSISAATCLLTSATCFRFTPHLPTTFSSTAVSLSPSPACLLSSPAPAFPTAAFTPTATAACLLPTPPPLLLPPPSPPPPSPPPPPPPPPPPPVYSPPPPPPSPPPPSPPPPVYSPPHLLLPHLRRHLLLPPTPPPPAPVYCVRPSPPPPPPNSPPPPPLFSPPPPVYYYNSPPPPNSPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPPTPVYYSPPPPVYYSPPPPSPSPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPFY 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1557380 1559658 + Tan0018386.1 Tan08g0179 760071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0179 752 Gene3D Ribonuclease Inhibitor 252 380 IPR032675 -
Tan08g0179 752 Gene3D Ribonuclease Inhibitor 89 251 IPR032675 -
Tan08g0179 752 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 29 672 IPR051582 -
Tan08g0179 752 MobiDBLite consensus disorder prediction 594 617 - -
Tan08g0179 752 MobiDBLite consensus disorder prediction 545 575 - -
Tan08g0179 752 FunFam Leucine-rich repeat extensin-like protein 1 90 251 - -
Tan08g0179 752 Pfam Leucine Rich Repeat 325 347 IPR001611 GO:0005515(InterPro)
Tan08g0179 752 Pfam Leucine Rich Repeat 301 323 IPR001611 GO:0005515(InterPro)
Tan08g0179 752 Pfam Leucine rich repeat N-terminal domain 92 124 IPR013210 -
Tan08g0179 752 MobiDBLite consensus disorder prediction 711 731 - -
Tan08g0179 752 FunFam Leucine-rich repeat extensin-like protein 5 252 391 - -
Tan08g0179 752 SUPERFAMILY L domain-like 90 371 - -
Tan08g0179 752 MobiDBLite consensus disorder prediction 546 575 - -
Tan08g0179 752 Pfam Leucine rich repeat 162 217 IPR001611 GO:0005515(InterPro)
Tan08g0179 752 MobiDBLite consensus disorder prediction 662 694 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2003 Tan-Chr6:64911250 Tan08g0179 Tan-Chr8:1557380 2.50E-37 dispersed
Tan08g0103 Tan-Chr8:895642 Tan08g0179 Tan-Chr8:1557380 1.30E-11 dispersed
Tan08g0179 Tan-Chr8:1557380 Tan10g0798 Tan-Chr10:6686244 1.00E-30 dispersed
Tan08g0179 Tan-Chr8:1557380 Tan09g1311 Tan-Chr9:65422738 2.90E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0179 - - - 0.0