Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0199 ATGCCATCTCCTTCAGAACTAAGCCTTGATTGCAAGCCTCACAGCTACTCTATGTTGTTGAAATCTTTTGTTTCAGATCATCAATTGGCTTTGCCTCCTCAAGATCTTCATACTCAGAAGCAACAACTTGAAGATTTGCTGTCTCGTCTTGAAGGAGAAAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGAGTTGTAGACAACAATTACAACAAGCATGCAGAGTAAACAACATTATTCATCAAAATGGACAAAAACCAGTTCTTGAAGAGTTCATTCCACTCAAACAATCAACCTCAGAAGGCTCAGAAACCATATCAAACATTTCTGATAAGGCAAATTGGATGACATCAGCCCAACTTTGGAGTCAAACAACAACAACAAATAATAATAATGATGAAACAAAACCAAATCTTTCCTCTTCAAAAGAAGCCATTATTGATCATCAAATTGATTTGATTCCAAAGCTTCAAAGAAATAACAACAACAACAACAATAATGCTGGAGCTTTTCTTCCATTTTCTAAAGATAGAATTTTGTGCACAACCCAAAATTCTAATTCTTCTCACCTTCCCGATTTGGCCCTCGCCGCCGCCGGCTGCGGCGGTGATCATCACAAAGAGATTGATGAAAATAAGTGTGTTAATAGTTCTTCCGATCACCACCAGCCGGACGGAAAAATGGGTTTGGCCGGAGAGGGACAAATTACGAGTAATAATATTTCTTCTACGGTGGCTAATAATAATACTAGTAATTCTACTAATCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGATTTGCACCGGCGGTTTGTGAATGCTCTTCAAATGCTTGGTGGTTCACAAGTTGCGACCCCAAAGCAAATCAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATCTGCAGAAATATAGGTTGCACACAAGACGACCCAGTCCAAGCCCACAAGCGGCCGGAGCTCCGGCCCCGCAGCTGGTGGTCCTAGGTGGCATCTGGGTTCCACCAGAATACGCCACGGCGGCCGCTGCCGCCGCACACGGCGGAGCTCCAGCACTCTACGGACCACACCCAACATCCTATTGTGCACCGCCGGTGCACCAAGATTTCTATCCGCCGCCGCCACCACTGCCGCACCACCAGCTCCACCACCAACACGCCCTCCACCAGCAGCTGCACATGTACAAGGCCGCCGCCGCCGCCGCTCAGGCCCAAAGCTCGCCAGAATCCGATGGGCGAGGCAACGGCGATCGATCAGAGAGCATCGAGGATGGCGGGAAGTCAGAGAGCGGCAGCTGGAAAGCAGAGAGCGGCGGAGAGAATAATGGTGGCGGCGGCGGAGGGGAGAGAAAGGGGAACTTGGCGGCGCTGAGGCAAGAGGCCGGAGAAGAAAGCAATGGGAGTGAAATTACACTCAAATTCTAA 1482 47.98 MPSPSELSLDCKPHSYSMLLKSFVSDHQLALPPQDLHTQKQQLEDLLSRLEGERLKIDAFKRELPLCMQLLTNALESCRQQLQQACRVNNIIHQNGQKPVLEEFIPLKQSTSEGSETISNISDKANWMTSAQLWSQTTTTNNNNDETKPNLSSSKEAIIDHQIDLIPKLQRNNNNNNNNAGAFLPFSKDRILCTTQNSNSSHLPDLALAAAGCGGDHHKEIDENKCVNSSSDHHQPDGKMGLAGEGQITSNNISSTVANNNTSNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLGGIWVPPEYATAAAAAAHGGAPALYGPHPTSYCAPPVHQDFYPPPPPLPHHQLHHQHALHQQLHMYKAAAAAAQAQSSPESDGRGNGDRSESIEDGGKSESGSWKAESGGENNGGGGGGERKGNLAALRQEAGEESNGSEITLKF 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1793984 1798251 + Tan0015422.1 Tan08g0199 760091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0199 493 FunFam Myb family transcription factor 271 329 - -
Tan08g0199 493 Gene3D - 271 329 - -
Tan08g0199 493 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 28 446 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0199 493 MobiDBLite consensus disorder prediction 432 449 - -
Tan08g0199 493 Pfam Myb-like DNA-binding domain 274 325 IPR001005 -
Tan08g0199 493 MobiDBLite consensus disorder prediction 226 245 - -
Tan08g0199 493 SUPERFAMILY Homeodomain-like 269 330 IPR009057 -
Tan08g0199 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 269 329 IPR017930 -
Tan08g0199 493 NCBIfam myb-like DNA-binding domain, SHAQKYF class 272 327 IPR006447 GO:0003677(InterPro)
Tan08g0199 493 MobiDBLite consensus disorder prediction 391 493 - -
Tan08g0199 493 Coils Coil 36 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0896 Tan-Chr4:7666739 Tan08g0199 Tan-Chr8:1793984 1.80E-41 dispersed
Tan05g1390 Tan-Chr5:19644335 Tan08g0199 Tan-Chr8:1793984 1.00E-45 dispersed
Tan08g0199 Tan-Chr8:1793984 Tan11g1867 Tan-Chr11:24114385 1.10E-41 dispersed
Tan08g0199 Tan-Chr8:1793984 Tan09g1338 Tan-Chr9:65679477 1.40E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28080 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0199 - - - 0.0