Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0199 ATGCCATCTCCTTCAGAACTAAGCCTTGATTGCAAGCCTCACAGCTACTCTATGTTGTTGAAATCTTTTGTTTCAGATCATCAATTGGCTTTGCCTCCTCAAGATCTTCATACTCAGAAGCAACAACTTGAAGATTTGCTGTCTCGTCTTGAAGGAGAAAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGAGTTGTAGACAACAATTACAACAAGCATGCAGAGTAAACAACATTATTCATCAAAATGGACAAAAACCAGTTCTTGAAGAGTTCATTCCACTCAAACAATCAACCTCAGAAGGCTCAGAAACCATATCAAACATTTCTGATAAGGCAAATTGGATGACATCAGCCCAACTTTGGAGTCAAACAACAACAACAAATAATAATAATGATGAAACAAAACCAAATCTTTCCTCTTCAAAAGAAGCCATTATTGATCATCAAATTGATTTGATTCCAAAGCTTCAAAGAAATAACAACAACAACAACAATAATGCTGGAGCTTTTCTTCCATTTTCTAAAGATAGAATTTTGTGCACAACCCAAAATTCTAATTCTTCTCACCTTCCCGATTTGGCCCTCGCCGCCGCCGGCTGCGGCGGTGATCATCACAAAGAGATTGATGAAAATAAGTGTGTTAATAGTTCTTCCGATCACCACCAGCCGGACGGAAAAATGGGTTTGGCCGGAGAGGGACAAATTACGAGTAATAATATTTCTTCTACGGTGGCTAATAATAATACTAGTAATTCTACTAATCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGATTTGCACCGGCGGTTTGTGAATGCTCTTCAAATGCTTGGTGGTTCACAAGTTGCGACCCCAAAGCAAATCAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATCTGCAGAAATATAGGTTGCACACAAGACGACCCAGTCCAAGCCCACAAGCGGCCGGAGCTCCGGCCCCGCAGCTGGTGGTCCTAGGTGGCATCTGGGTTCCACCAGAATACGCCACGGCGGCCGCTGCCGCCGCACACGGCGGAGCTCCAGCACTCTACGGACCACACCCAACATCCTATTGTGCACCGCCGGTGCACCAAGATTTCTATCCGCCGCCGCCACCACTGCCGCACCACCAGCTCCACCACCAACACGCCCTCCACCAGCAGCTGCACATGTACAAGGCCGCCGCCGCCGCCGCTCAGGCCCAAAGCTCGCCAGAATCCGATGGGCGAGGCAACGGCGATCGATCAGAGAGCATCGAGGATGGCGGGAAGTCAGAGAGCGGCAGCTGGAAAGCAGAGAGCGGCGGAGAGAATAATGGTGGCGGCGGCGGAGGGGAGAGAAAGGGGAACTTGGCGGCGCTGAGGCAAGAGGCCGGAGAAGAAAGCAATGGGAGTGAAATTACACTCAAATTCTAA 1482 47.98 MPSPSELSLDCKPHSYSMLLKSFVSDHQLALPPQDLHTQKQQLEDLLSRLEGERLKIDAFKRELPLCMQLLTNALESCRQQLQQACRVNNIIHQNGQKPVLEEFIPLKQSTSEGSETISNISDKANWMTSAQLWSQTTTTNNNNDETKPNLSSSKEAIIDHQIDLIPKLQRNNNNNNNNAGAFLPFSKDRILCTTQNSNSSHLPDLALAAAGCGGDHHKEIDENKCVNSSSDHHQPDGKMGLAGEGQITSNNISSTVANNNTSNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLGGIWVPPEYATAAAAAAHGGAPALYGPHPTSYCAPPVHQDFYPPPPPLPHHQLHHQHALHQQLHMYKAAAAAAQAQSSPESDGRGNGDRSESIEDGGKSESGSWKAESGGENNGGGGGGERKGNLAALRQEAGEESNGSEITLKF 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1793984 1798251 + Tan0015422.1 Tan08g0199 760091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0199 493 FunFam Myb family transcription factor 271 329 - -
Tan08g0199 493 Gene3D - 271 329 - -
Tan08g0199 493 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 28 446 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0199 493 MobiDBLite consensus disorder prediction 432 449 - -
Tan08g0199 493 Pfam Myb-like DNA-binding domain 274 325 IPR001005 -
Tan08g0199 493 MobiDBLite consensus disorder prediction 226 245 - -
Tan08g0199 493 SUPERFAMILY Homeodomain-like 269 330 IPR009057 -
Tan08g0199 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 269 329 IPR017930 -
Tan08g0199 493 NCBIfam myb-like DNA-binding domain, SHAQKYF class 272 327 IPR006447 GO:0003677(InterPro)
Tan08g0199 493 MobiDBLite consensus disorder prediction 391 493 - -
Tan08g0199 493 Coils Coil 36 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0199 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0896 Tan-Chr4:7666739 Tan08g0199 Tan-Chr8:1793984 1.80E-41 dispersed
Tan05g1390 Tan-Chr5:19644335 Tan08g0199 Tan-Chr8:1793984 1.00E-45 dispersed
Tan08g0199 Tan-Chr8:1793984 Tan11g1867 Tan-Chr11:24114385 1.10E-41 dispersed
Tan08g0199 Tan-Chr8:1793984 Tan09g1338 Tan-Chr9:65679477 1.40E-81 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002001 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28080 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Tan TF