Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0220 ATGGCCGCCATAGCCCGAGACGAGTCCGACTACGACAGCAGTTGCTCCTCCATCACCGTCCCAGACTCGAGCCGCAGCTGGATGAGCAACCTCAGCTTCGGGAGCCGGCGTCGGAGCAGCAGCTCCGGCGCCGACGCCGGAAGCTCTCCCCACAAACCCCACAAAGCAAACCAAGTAGCGTGGGAGGCGATGCGGTGGCTCCGGGGAGTGAAAGGGCGTGTGGGACTGGAGCACTTCCGACTGCTCCGGCGGCTGGGGAGCGGAGACATTGGGAATGTTTATCTGTGCGAAATAAGGAATCCGATGGTGGGTCTGGCGCAGTGCTTTTACGCAATGAAAGTGGTTGACAGAGAAGCGCTTTCAGTTAGGAATAAGGAGAGAAGAGCGGATATGGAGAAGGAGATTCTTAAAGTGATTGATCATCCATTTTTGCCCACGCTTTATGCAGAGTTTGAAGCTTCTCATTACTCGTGTTTGGTTATGGAGTTTTGTCCCGGTGGAGATTTGTATGCCGCTCGCCAACGCCTCCCCGGAAAACGATTCTCCATTTCTTCTGCTAAGTTTTATGCGGCGGAGATAATTTTAGGCCTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTGAAGCCGGAAAACGTGCTGGTTCGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCAAGGCTTATCCGCTGCAGAACCACCGCATCCGACGCCGCCGAACGCCACGTCAAAACCTACTCCACGTCATCAACCACCTCCTGCGCCGCCGCCCCAATCCAGCCTGTCCTCTCCTGTTTCTCCCTCGCCCGCCGCAGAAAATCCACCACCGTCACCACCATCACCGAACACGCAGCCGCCGCCGCTGCCGACGACGACGGCGACGGTGGCGAGTTCGACCCAGAGCCGGAATTAGTAGCGGAGCCGATCAACGCCCGGTCGAAATCCTTCGTGGGAACCCACGAGTATTTAGCGCCGGAGGTGATCTCCGGGCAGGGACACGGCAGCGCCGTCGATTGGTGGACGTTGGGAATTTTCCTATACGAAATGTTGTACGGAAAAACCCCATTTAAAGGGGAAAGTAACGAGAAAACCCTAATCAACATTTTGAAGCAGCCATTGGCGTTTCCAAGAATTGGGTTTAGTAATAGTAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAAGATCTAATCAAGAAGCTTTTGGTGAAGAATCCCAAAAAGAGAATTGGAAGCTTTAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCTTTAATCCGCTCGGTTCGACCTCCCCAAATCCCCAACTCCGACCATCTACTTCACAACAATATTAATCCATCTAAATACTCTTCTAATTACTTACCTAAATTAAGCAAGAAGCAACGTGAACAACCCTATCAAATCCCTCCTCACCACTTTGATTACTTCTAA 1488 51.48 MAAIARDESDYDSSCSSITVPDSSRSWMSNLSFGSRRRSSSSGADAGSSPHKPHKANQVAWEAMRWLRGVKGRVGLEHFRLLRRLGSGDIGNVYLCEIRNPMVGLAQCFYAMKVVDREALSVRNKERRADMEKEILKVIDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRLPGKRFSISSAKFYAAEIILGLEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPRLIRCRTTASDAAERHVKTYSTSSTTSCAAAPIQPVLSCFSLARRRKSTTVTTITEHAAAAAADDDGDGGEFDPEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGESNEKTLINILKQPLAFPRIGFSNSSKEYEEMVKVEDLIKKLLVKNPKKRIGSFKGSVEIKRHEFFKGVNWALIRSVRPPQIPNSDHLLHNNINPSKYSSNYLPKLSKKQREQPYQIPPHHFDYF 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1979177 1981793 - Tan0014868.1 Tan08g0220 760112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0220 495 ProSiteProfiles Protein kinase domain profile. 79 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0220 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0220 495 FunFam serine/threonine-protein kinase D6PK-like 323 454 - -
Tan08g0220 495 FunFam protein kinase PINOID 164 232 - -
Tan08g0220 495 SMART serkin_6 79 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0220 495 Gene3D Phosphorylase Kinase; domain 1 77 163 - -
Tan08g0220 495 MobiDBLite consensus disorder prediction 1 56 - -
Tan08g0220 495 Gene3D Transferase(Phosphotransferase) domain 1 164 233 - -
Tan08g0220 495 Pfam Protein kinase domain 325 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0220 495 Pfam Protein kinase domain 80 233 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0220 495 CDD STKc_phototropin_like 78 453 - -
Tan08g0220 495 FunFam protein kinase PINOID 2 77 163 - -
Tan08g0220 495 SUPERFAMILY Protein kinase-like (PK-like) 56 458 IPR011009 -
Tan08g0220 495 MobiDBLite consensus disorder prediction 10 47 - -
Tan08g0220 495 PANTHER FLIPPASE KINASE 1-RELATED 30 460 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Tan08g0220 495 Gene3D Transferase(Phosphotransferase) domain 1 323 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1838 Tan-Chr5:62340206 Tan08g0220 Tan-Chr8:1979177 3.50E-114 dispersed
Tan05g2687 Tan-Chr5:78551388 Tan08g0220 Tan-Chr8:1979177 4.60E-106 dispersed
Tan08g0220 Tan-Chr8:1979177 Tan10g0017 Tan-Chr10:455220 1.30E-111 dispersed
Tan08g0220 Tan-Chr8:1979177 Tan03g2209 Tan-Chr3:76562627 4.10E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67915 PF00069 Pkinase 5.40E-32 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0220 K08286 - csv:101202905 801.971