Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0245 ATGGTACCATCAAAGAAGTTCAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTCTCTGAAATTCGTCACCCTCTTCTGAAGAGAAGGGTTTGGTTAGGGACTTTTGAGACGGCGGAGGAGGCGGCGAGAGCTTACGATCAGGCCGCCGTGTTAATGAGCGGTCGGAATGCAAAAACCAACTTTCCGATGAGCCAAACTGCGGCGCTGGAATCAGAAAAATCCGACCGGATCTCTTCTCCATCTTCTCCAAAGGGATTATCGGAGATCCTCCATGCCAAGCTCCGAAAATGCAGCAAAGCGCCGTCGCCGTCGATGACATGTCTCCGACTCGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGTCAACGCTCCGACTCCAGTTGGGTCATGACCGTTCATGTCGGAAGAAACAACTCCTCTGCCGCCACTGTCGCCGCTGCCGGCGGCAACGACGACCGTGGGCAGTTGCGGAATAATAACAATATTGGTTCCTTCTCGGCCGGTTTGAGCTCGCAAGGAGGAGCTCCAATGGCGGCTGGTGGGCCCCACGTGAGAAATTTGCAGAGGGATGAAGAAGAAAGAATTGCACTGCAAATGATTGAGGAGTTACTGAGCAGAAATTACAGTAACCCATCTGATATTCAAGTTCAAGATCATCAAGGGGAAGCAAGTTTTTACCCTCTCTAA 702 52.28 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAALESEKSDRISSPSSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHVGRNNSSAATVAAAGGNDDRGQLRNNNNIGSFSAGLSSQGGAPMAAGGPHVRNLQRDEEERIALQMIEELLSRNYSNPSDIQVQDHQGEASFYPL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2147093 2148850 - Tan0009552.1 Tan08g0245 760137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0245 233 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0245 233 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Tan08g0245 233 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 153 IPR050913 -
Tan08g0245 233 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0245 233 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0245 233 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0245 233 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0245 233 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0245 233 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Tan08g0245 233 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0461 Tan-Chr6:3338953 Tan08g0245 Tan-Chr8:2147093 3.70E-25 dispersed
Tan08g0245 Tan-Chr8:2147093 Tan03g1537 Tan-Chr3:71616888 4.40E-17 dispersed
Tan01g3651 Tan-Chr1:101400068 Tan08g0245 Tan-Chr8:2147093 4.10E-56 wgd
Tan04g2588 Tan-Chr4:85134294 Tan08g0245 Tan-Chr8:2147093 3.80E-46 wgd
Tan08g0245 Tan-Chr8:2147093 Tan09g1407 Tan-Chr9:66205355 2.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28082 PF00847 AP2 3.30E-12 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0245 - - - 0.0