Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0251 ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCACAGTGGCAGTGCAGCTGATTACAGGGTTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCATTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 573 44.15 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSAADYRVELGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2246320 2250871 - Tan0000873.1 Tan08g0251 760143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0251 190 FunFam axial regulator YABBY 5-like 102 160 - -
Tan08g0251 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Tan08g0251 190 CDD HMG-box_SF 118 154 - -
Tan08g0251 190 PANTHER PROTEIN YABBY 6-RELATED 8 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Tan08g0251 190 Gene3D High mobility group box domain 90 159 IPR036910 -
Tan08g0251 190 SUPERFAMILY HMG-box 103 157 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0251 K25796 - - csv:101219877 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2844 Tan-Chr2:96727826 Tan08g0251 Tan-Chr8:2246320 5.60E-21 dispersed
Tan05g0067 Tan-Chr5:664647 Tan08g0251 Tan-Chr8:2246320 6.10E-48 dispersed
Tan05g0068 Tan-Chr5:666831 Tan08g0251 Tan-Chr8:2246320 1.60E-39 dispersed
Tan08g0251 Tan-Chr8:2246320 Tan08g0252 Tan-Chr8:2246320 7.70E-76 tandem
Tan01g2003 Tan-Chr1:22336772 Tan08g0251 Tan-Chr8:2246320 3.50E-40 transposed
Tan04g0975 Tan-Chr4:8848483 Tan08g0251 Tan-Chr8:2246320 6.40E-32 transposed
Tan07g1851 Tan-Chr7:70058851 Tan08g0251 Tan-Chr8:2246320 8.20E-43 transposed
Tan08g0251 Tan-Chr8:2246320 Tan09g1419 Tan-Chr9:66313511 7.20E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0975 . 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 53.3 4.7e-46 181.8
Tan07g1851 . 79 237 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 9.8e-43 170.6
Tan01g2003 . 66 218 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 4.5e-40 161.8
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT1G08465 69.0 1.7e-56 216.5
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT1G08465 68.0 4.7e-46 181.8
Tan07g1851 . 35 227 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 4.4e-44 175.3
Tan09g1419 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 1.1e-42 170.6
Tan01g2003 . 17 195 C2C2-YABBY Transcription Factor Family AT1G08465 51.6 4.6e-41 165.2
Tan07g1851 . 46 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.6 1.6e-50 196.8
Tan01g2003 . 27 216 C2C2-YABBY Transcription Factor Family AT4G00180 52.1 6.3e-47 184.9
Tan04g1253 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.0 8.5e-41 164.9
Tan09g1419 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 5.9e-64 241.1
Tan08g0251 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 62.5 3.3e-51 198.7
Tan07g1851 . 35 199 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 1.5e-43 173.3
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT2G26580 63.2 6.3e-42 167.9
Tan01g2003 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 51.2 6.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28083 PF04690 YABBY 5.10E-71 CL0114 Tan TF