Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0251 | ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCACAGTGGCAGTGCAGCTGATTACAGGGTTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCATTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 573 | 44.15 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSAADYRVELGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2246320 | 2250871 | - | Tan0000873.1 | Tan08g0251 | 760143 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0251 | 190 | FunFam | axial regulator YABBY 5-like | 102 | 160 | - | - | |
Tan08g0251 | 190 | Pfam | YABBY protein | 8 | 164 | IPR006780 | GO:0007275(InterPro) | |
Tan08g0251 | 190 | CDD | HMG-box_SF | 118 | 154 | - | - | |
Tan08g0251 | 190 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Tan08g0251 | 190 | Gene3D | High mobility group box domain | 90 | 159 | IPR036910 | - | |
Tan08g0251 | 190 | SUPERFAMILY | HMG-box | 103 | 157 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g2844 | Tan-Chr2:96727826 | Tan08g0251 | Tan-Chr8:2246320 | 5.60E-21 | dispersed | |
Tan05g0067 | Tan-Chr5:664647 | Tan08g0251 | Tan-Chr8:2246320 | 6.10E-48 | dispersed | |
Tan05g0068 | Tan-Chr5:666831 | Tan08g0251 | Tan-Chr8:2246320 | 1.60E-39 | dispersed | |
Tan08g0251 | Tan-Chr8:2246320 | Tan08g0252 | Tan-Chr8:2246320 | 7.70E-76 | tandem | |
Tan01g2003 | Tan-Chr1:22336772 | Tan08g0251 | Tan-Chr8:2246320 | 3.50E-40 | transposed | |
Tan04g0975 | Tan-Chr4:8848483 | Tan08g0251 | Tan-Chr8:2246320 | 6.40E-32 | transposed | |
Tan07g1851 | Tan-Chr7:70058851 | Tan08g0251 | Tan-Chr8:2246320 | 8.20E-43 | transposed | |
Tan08g0251 | Tan-Chr8:2246320 | Tan09g1419 | Tan-Chr9:66313511 | 7.20E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28083 | PF04690 | YABBY | 5.10E-71 | CL0114 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0251 | K25796 | - | csv:101219877 | 372.859 |