Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0251 ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCACAGTGGCAGTGCAGCTGATTACAGGGTTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCATTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 573 44.15 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSAADYRVELGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2246320 2250871 - Tan0000873.1 Tan08g0251 760143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0251 190 FunFam axial regulator YABBY 5-like 102 160 - -
Tan08g0251 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Tan08g0251 190 CDD HMG-box_SF 118 154 - -
Tan08g0251 190 PANTHER PROTEIN YABBY 6-RELATED 8 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Tan08g0251 190 Gene3D High mobility group box domain 90 159 IPR036910 -
Tan08g0251 190 SUPERFAMILY HMG-box 103 157 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2844 Tan-Chr2:96727826 Tan08g0251 Tan-Chr8:2246320 5.60E-21 dispersed
Tan05g0067 Tan-Chr5:664647 Tan08g0251 Tan-Chr8:2246320 6.10E-48 dispersed
Tan05g0068 Tan-Chr5:666831 Tan08g0251 Tan-Chr8:2246320 1.60E-39 dispersed
Tan08g0251 Tan-Chr8:2246320 Tan08g0252 Tan-Chr8:2246320 7.70E-76 tandem
Tan01g2003 Tan-Chr1:22336772 Tan08g0251 Tan-Chr8:2246320 3.50E-40 transposed
Tan04g0975 Tan-Chr4:8848483 Tan08g0251 Tan-Chr8:2246320 6.40E-32 transposed
Tan07g1851 Tan-Chr7:70058851 Tan08g0251 Tan-Chr8:2246320 8.20E-43 transposed
Tan08g0251 Tan-Chr8:2246320 Tan09g1419 Tan-Chr9:66313511 7.20E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28083 PF04690 YABBY 5.10E-71 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0251 K25796 - csv:101219877 372.859