Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0286 ATGGAGCCCGCCGACTCCAGCAATGACGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCACTTGCCAATTCTTCCTCACAGGTCGCCCTTGTTGGGGCTAATGTCTGCCCCATTGAGAGTCTTGATTACGAGATTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTTCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGGTTGATTATGGGTCTTGTTGGGTTTTTCAACAATCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTCTCATTACGGCATTGATCTGCCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCTGGAATATTATCGCGTCGGACGTTGTTAGTGAAGATTATTGGCAGCATTTCTATTGTGTCGTCATCTATGATCGTTGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGCCGGGGGGGTTTCAAAATATTTGGTTTAACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCTGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGCGGCGTGCTATTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGCGATCATTATTCACAACGGCTATTGTTGCTGTGGTATTGCGCTCACTGATTGACGTTTGTTTAAATGGATTGTGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTTTCCCTCATATCACATCAATGATCTACCTCCTGTGCTTGCCCTTGCTTTTATTGGAGGCATACTTGGGAGCTTATATAATTTTCTTTTAACCAAAGTTCTTCGCATTTACAATCTCATACACGAGAAAGGCATTGTTTACAAAATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCATGGATCGCATCATGCCAACCTTGTCCATCAGGTGCTCGAGAAATTTGTCCTACAATAGGCCGATCGGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGACGATGCCATAAAAAATCTCTTTAGCAAGGGCACAGACTCTGAGTTCCAGTTCTCATCAATGCTCACATTTTTCATTACCTGTTTTTCCTTGAGCATTCTCAGTTATGGGACGGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCATTGGAATGGTTGTTGGTCCATACACAAACCTTGGCCATGGCTTCTTTGCCATTTTGGGTGCTGCTTCATTTCTCGGGGGGTCGATGAGGACAACAGTTTCTCTCTGTGTTATTATGCTCGAATTGACCAATAATTTGTTGTTGTTGCCTTTAGTGATGTTGGTTCTCCTTATTTCCAAGACTGTGGCTGATGCTTTCAACTGTAATATATATAACCAGATCATGAAAGCAAAAGGATTCCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTGACTGTCGCCGATGTGTTAACAAGTCCGCTTCAATTATTTCGTGGCATTGAGAAGGTTCGTAATGTAGTAAACGTTCTGAAATGGACGAGCCATCACGGATTTCCTATCATTGACGAGCCTCCTTTCTCTGAAATCCCTGTTTTATATGGCCTAATTCTCAGAACCCATCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTTCCAACACTAGGATCAGAAAGAAAGGATGCCTCTAAGCTATTCTCAGCTGATGATTTTGCAAAGATGGGTTCGAGCAACGTTGATAGGATTGAAGATGTACAATTGACCAATGAAGAGATGGAGATGTTCATTGATCTACATCTGTTCGCTAATACTTCACCTTGCACGGTCTTGGAGACGATGTCGTTAGCAAAGGCTCTTGAAATTTTTCGAGAAACCGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGATTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAGAGGTTAAGAATCAAATTTCACCTGAAGAAAAAATTCTTCTAG 2325 43.23 MEPADSSNDDEESIITPLLAPQKSLANSSSQVALVGANVCPIESLDYEIFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASLITALICPQAAGSGIPEVKAYLNGVDAPGILSRRTLLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGRGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSLFTTAIVAVVLRSLIDVCLNGLCGLFGKGGLIIFDTYSDFPSYHINDLPPVLALAFIGGILGSLYNFLLTKVLRIYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWIASCQPCPSGAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQFSSMLTFFITCFSLSILSYGTVAPVGLFVPVIVTGASYGRFIGMVVGPYTNLGHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLFRGIEKVRNVVNVLKWTSHHGFPIIDEPPFSEIPVLYGLILRTHLIMLLKKKAFLSVPTLGSERKDASKLFSADDFAKMGSSNVDRIEDVQLTNEEMEMFIDLHLFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRSPVIGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKKKFF 774
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 2605050 2610519 - Tan0017111.1 Tan08g0286 760178
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0286 774 SUPERFAMILY Clc chloride channel 52 566 IPR014743 -
Tan08g0286 774 Pfam Voltage gated chloride channel 131 545 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 745 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Tan08g0286 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 746 - -
Tan08g0286 774 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Tan08g0286 774 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Tan08g0286 774 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Tan08g0286 774 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Tan08g0286 774 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Tan08g0286 774 Gene3D Clc chloride channel 66 564 - -
Tan08g0286 774 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0286 774 Gene3D - 565 746 IPR046342 -
Tan08g0286 774 SUPERFAMILY CBS-domain pair 567 744 IPR046342 -
Tan08g0286 774 Pfam CBS domain 696 744 IPR000644 -
Tan08g0286 774 ProSiteProfiles CBS domain profile. 694 754 IPR000644 -
Tan08g0286 774 FunFam Chloride channel ClC3 66 383 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1512 Tan-Chr1:15440069 Tan08g0286 Tan-Chr8:2605050 1.30E-259 dispersed
Tan06g2537 Tan-Chr6:78067026 Tan08g0286 Tan-Chr8:2605050 1.90E-168 dispersed
Tan08g0286 Tan-Chr8:2605050 Tan11g0159 Tan-Chr11:1443558 5.50E-213 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0286 K05016 - csv:101216071 1385.55