Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan08g0286 | ATGGAGCCCGCCGACTCCAGCAATGACGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCACTTGCCAATTCTTCCTCACAGGTCGCCCTTGTTGGGGCTAATGTCTGCCCCATTGAGAGTCTTGATTACGAGATTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTTCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGGTTGATTATGGGTCTTGTTGGGTTTTTCAACAATCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTCTCATTACGGCATTGATCTGCCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCTGGAATATTATCGCGTCGGACGTTGTTAGTGAAGATTATTGGCAGCATTTCTATTGTGTCGTCATCTATGATCGTTGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGCCGGGGGGGTTTCAAAATATTTGGTTTAACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCTGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGCGGCGTGCTATTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGCGATCATTATTCACAACGGCTATTGTTGCTGTGGTATTGCGCTCACTGATTGACGTTTGTTTAAATGGATTGTGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTTTCCCTCATATCACATCAATGATCTACCTCCTGTGCTTGCCCTTGCTTTTATTGGAGGCATACTTGGGAGCTTATATAATTTTCTTTTAACCAAAGTTCTTCGCATTTACAATCTCATACACGAGAAAGGCATTGTTTACAAAATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCATGGATCGCATCATGCCAACCTTGTCCATCAGGTGCTCGAGAAATTTGTCCTACAATAGGCCGATCGGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGACGATGCCATAAAAAATCTCTTTAGCAAGGGCACAGACTCTGAGTTCCAGTTCTCATCAATGCTCACATTTTTCATTACCTGTTTTTCCTTGAGCATTCTCAGTTATGGGACGGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCATTGGAATGGTTGTTGGTCCATACACAAACCTTGGCCATGGCTTCTTTGCCATTTTGGGTGCTGCTTCATTTCTCGGGGGGTCGATGAGGACAACAGTTTCTCTCTGTGTTATTATGCTCGAATTGACCAATAATTTGTTGTTGTTGCCTTTAGTGATGTTGGTTCTCCTTATTTCCAAGACTGTGGCTGATGCTTTCAACTGTAATATATATAACCAGATCATGAAAGCAAAAGGATTCCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTGACTGTCGCCGATGTGTTAACAAGTCCGCTTCAATTATTTCGTGGCATTGAGAAGGTTCGTAATGTAGTAAACGTTCTGAAATGGACGAGCCATCACGGATTTCCTATCATTGACGAGCCTCCTTTCTCTGAAATCCCTGTTTTATATGGCCTAATTCTCAGAACCCATCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTTCCAACACTAGGATCAGAAAGAAAGGATGCCTCTAAGCTATTCTCAGCTGATGATTTTGCAAAGATGGGTTCGAGCAACGTTGATAGGATTGAAGATGTACAATTGACCAATGAAGAGATGGAGATGTTCATTGATCTACATCTGTTCGCTAATACTTCACCTTGCACGGTCTTGGAGACGATGTCGTTAGCAAAGGCTCTTGAAATTTTTCGAGAAACCGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGATTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAGAGGTTAAGAATCAAATTTCACCTGAAGAAAAAATTCTTCTAG | 2325 | 43.23 | MEPADSSNDDEESIITPLLAPQKSLANSSSQVALVGANVCPIESLDYEIFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASLITALICPQAAGSGIPEVKAYLNGVDAPGILSRRTLLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGRGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSLFTTAIVAVVLRSLIDVCLNGLCGLFGKGGLIIFDTYSDFPSYHINDLPPVLALAFIGGILGSLYNFLLTKVLRIYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWIASCQPCPSGAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQFSSMLTFFITCFSLSILSYGTVAPVGLFVPVIVTGASYGRFIGMVVGPYTNLGHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLFRGIEKVRNVVNVLKWTSHHGFPIIDEPPFSEIPVLYGLILRTHLIMLLKKKAFLSVPTLGSERKDASKLFSADDFAKMGSSNVDRIEDVQLTNEEMEMFIDLHLFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRSPVIGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKKKFF | 774 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 2605050 | 2610519 | - | Tan0017111.1 | Tan08g0286 | 760178 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan08g0286 | 774 | SUPERFAMILY | Clc chloride channel | 52 | 566 | IPR014743 | - | |
| Tan08g0286 | 774 | Pfam | Voltage gated chloride channel | 131 | 545 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 745 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Tan08g0286 | 774 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 576 | 746 | - | - | |
| Tan08g0286 | 774 | PRINTS | Plant CLC chloride channel signature | 291 | 298 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Plant CLC chloride channel signature | 415 | 431 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Plant CLC chloride channel signature | 273 | 283 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Plant CLC chloride channel signature | 259 | 267 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan08g0286 | 774 | Gene3D | Clc chloride channel | 66 | 564 | - | - | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 143 | 160 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 463 | 483 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 174 | 193 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 238 | 257 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 513 | 532 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 551 | 565 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | PRINTS | Chloride channel signature | 495 | 511 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan08g0286 | 774 | Gene3D | - | 565 | 746 | IPR046342 | - | |
| Tan08g0286 | 774 | SUPERFAMILY | CBS-domain pair | 567 | 744 | IPR046342 | - | |
| Tan08g0286 | 774 | Pfam | CBS domain | 696 | 744 | IPR000644 | - | |
| Tan08g0286 | 774 | ProSiteProfiles | CBS domain profile. | 694 | 754 | IPR000644 | - | |
| Tan08g0286 | 774 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g1512 | Tan-Chr1:15440069 | Tan08g0286 | Tan-Chr8:2605050 | 1.30E-259 | dispersed | |
| Tan06g2537 | Tan-Chr6:78067026 | Tan08g0286 | Tan-Chr8:2605050 | 1.90E-168 | dispersed | |
| Tan08g0286 | Tan-Chr8:2605050 | Tan11g0159 | Tan-Chr11:1443558 | 5.50E-213 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan08g0286 | K05016 | - | csv:101216071 | 1385.55 |