Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0308 ATGACTGTGGAGGATCGAAGGTCTAATTTGGTGGGTGAAAATGGGGATATGGACCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATACCATGTTACAACGACCAATCAGGCGGTTCAGGCACTTACAATGTTGAGGGAAAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTGAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGGTACTTCCCATAACTTGAGTAGCTCATTAAATATACTTGGGAAACCTCATCCAGCTCTCTTGCTGGCAAACCAACCGCCGAGCATATTCAACGGTGTTTCGACACCATTGGATCACATCCAGTTGCATCGGGACAAACACACTATGCCACTTAAAGAGTCTAATTTGATAAATGATGCCTTGAGTTTTACAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGATGAATTTGGATTTTGA 2010 42.64 MTVEDRRSNLVGENGDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALTMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQGTSHNLSSSLNILGKPHPALLLANQPPSIFNGVSTPLDHIQLHRDKHTMPLKESNLINDALSFTVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQDQDQSIQINDEFGF 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2772898 2777527 - Tan0003810.1 Tan08g0308 760200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0308 669 Pfam Myb-like DNA-binding domain 214 263 IPR001005 -
Tan08g0308 669 SUPERFAMILY CheY-like 23 149 IPR011006 -
Tan08g0308 669 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 269 IPR045279 GO:0009736(InterPro)
Tan08g0308 669 CDD REC_typeB_ARR-like 26 140 - -
Tan08g0308 669 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Tan08g0308 669 FunFam Two-component response regulator 207 270 - -
Tan08g0308 669 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Tan08g0308 669 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Tan08g0308 669 Gene3D - 24 178 - -
Tan08g0308 669 MobiDBLite consensus disorder prediction 172 210 - -
Tan08g0308 669 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tan08g0308 669 Gene3D - 207 270 - -
Tan08g0308 669 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Tan08g0308 669 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Tan08g0308 669 PIRSF RR_ARR_type-B 1 669 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0308 Tan-Chr8:2772898 Tan08g0310 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0308 Tan-Chr8:2772898 Tan08g0309 Tan-Chr8:2772898 0.00E+00 tandem
Tan08g0308 Tan-Chr8:2772898 Tan09g1541 Tan-Chr9:67275508 2.10E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28086 PF00072 Response_reg 4.60E-25 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0308 K14491 - csv:101203718 988.793