Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0309 | ATGACTGTGGAGGATCGAAGGTCTAATTTGGTGGGTGAAAATGGGGATATGGACCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATACCATGTTACAACGACCAATCAGGCGGTTCAGGCACTTACAATGTTGAGGGAAAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTGAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGATGAATTTGGATTTTGA | 1818 | 42.63 | MTVEDRRSNLVGENGDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALTMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQDQDQSIQINDEFGF | 605 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2772898 | 2777527 | - | Tan0003810.2 | Tan08g0309 | 760201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0309 | 605 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Tan08g0309 | 605 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 19 | 338 | IPR045279 | GO:0009736(InterPro) | |
Tan08g0309 | 605 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Tan08g0309 | 605 | Pfam | Myb-like DNA-binding domain | 214 | 263 | IPR001005 | - | |
Tan08g0309 | 605 | MobiDBLite | consensus disorder prediction | 172 | 210 | - | - | |
Tan08g0309 | 605 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 211 | 264 | IPR006447 | GO:0003677(InterPro) | |
Tan08g0309 | 605 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 208 | 267 | IPR017930 | - | |
Tan08g0309 | 605 | Gene3D | - | 207 | 270 | - | - | |
Tan08g0309 | 605 | FunFam | Two-component response regulator | 207 | 270 | - | - | |
Tan08g0309 | 605 | SUPERFAMILY | Homeodomain-like | 208 | 268 | IPR009057 | - | |
Tan08g0309 | 605 | PIRSF | RR_ARR_type-B | 1 | 605 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Tan08g0309 | 605 | Gene3D | - | 24 | 179 | - | - | |
Tan08g0309 | 605 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Tan08g0309 | 605 | SUPERFAMILY | CheY-like | 23 | 149 | IPR011006 | - | |
Tan08g0309 | 605 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0309 | Tan-Chr8:2772898 | Tan08g0316 | Tan-Chr8:2772898 | 0.00E+00 | dispersed | |
Tan08g0308 | Tan-Chr8:2772898 | Tan08g0309 | Tan-Chr8:2772898 | 0.00E+00 | tandem | |
Tan08g0309 | Tan-Chr8:2772898 | Tan08g0310 | Tan-Chr8:2772898 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28087 | PF00072 | Response_reg | 4.00E-25 | CL0304 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0309 | K14491 | - | csv:101203718 | 808.52 |