Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0312 ATGGGGATATGGACCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATACCATGCTTATGTTGTCTATTGCAGTTACAACGACCAATCAGGCGGTTCAGGCACTTACAATGTTGAGGGAAAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTGAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGGTACTTCCCATAACTTGAGTAGCTCATTAAATATACTTGGGAAACCTCATCCAGCTCTCTTGCTGGCAAACCAACCGCCGAGCATATTCAACGGTGTTTCGACACCATTGGATCACATCCAGTTGCATCGGGACAAACACACTATGCCACTTAAAGAGTCTAATTTGATAAATGATGCCTTGAGTTTTACAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGTATCATCAAGGCGTTTCCTTTTTTCATACGTATATTCAATTATTCTCCTACTTTATATTCAGATTACATGA 2016 42.46 MGIWTSFLLVCVFLLWMMTPFALRFWRICFVNVNTMLMLSIAVTTTNQAVQALTMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQGTSHNLSSSLNILGKPHPALLLANQPPSIFNGVSTPLDHIQLHRDKHTMPLKESNLINDALSFTVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQVSSRRFLFSYVYSIILLLYIQIT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2772898 2777527 - Tan0003810.5 Tan08g0312 760204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0312 671 Pfam Response regulator receiver domain 41 127 IPR001789 GO:0000160(InterPro)
Tan08g0312 671 Gene3D - 200 263 - -
Tan08g0312 671 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Tan08g0312 671 PIRSF RR_ARR_type-B 27 655 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Tan08g0312 671 CDD REC_typeB_ARR-like 29 133 - -
Tan08g0312 671 SUPERFAMILY CheY-like 39 142 IPR011006 -
Tan08g0312 671 Gene3D - 33 171 - -
Tan08g0312 671 MobiDBLite consensus disorder prediction 165 203 - -
Tan08g0312 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Tan08g0312 671 FunFam Two-component response regulator 200 263 - -
Tan08g0312 671 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Tan08g0312 671 Pfam Myb-like DNA-binding domain 207 256 IPR001005 -
Tan08g0312 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Tan08g0312 671 SMART REC_2 26 129 IPR001789 GO:0000160(InterPro)
Tan08g0312 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 326 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0312 Tan-Chr8:2772898 Tan08g0318 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0311 Tan-Chr8:2772898 Tan08g0312 Tan-Chr8:2772898 6.5e-312 tandem
Tan08g0312 Tan-Chr8:2772898 Tan08g0313 Tan-Chr8:2772898 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28090 PF00072 Response_reg 5.30E-18 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0312 K14491 - csv:101203718 873.233