Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0316 ATGACTGTGGAGGATCGAAGGTCTAATTTGGTGGGTGAAAATGGGGATATGGACCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATACCATGTTACAACGACCAATCAGGCGGTTCAGGCACTTACAATGTTGAGGGAAAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTGAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGTATCATCAAGGCGTTTCCTTTTTTCATACGTATATTCAATTATTCTCCTACTTTATATTCAGATTACATGA 1845 42.55 MTVEDRRSNLVGENGDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALTMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQVSSRRFLFSYVYSIILLLYIQIT 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2772898 2777527 - Tan0003810.9 Tan08g0316 760208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0316 614 Gene3D - 24 179 - -
Tan08g0316 614 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Tan08g0316 614 FunFam Two-component response regulator 207 270 - -
Tan08g0316 614 CDD REC_typeB_ARR-like 26 140 - -
Tan08g0316 614 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Tan08g0316 614 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Tan08g0316 614 MobiDBLite consensus disorder prediction 172 210 - -
Tan08g0316 614 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tan08g0316 614 SUPERFAMILY CheY-like 23 149 IPR011006 -
Tan08g0316 614 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 327 IPR045279 GO:0009736(InterPro)
Tan08g0316 614 PIRSF RR_ARR_type-B 1 600 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Tan08g0316 614 Gene3D - 207 270 - -
Tan08g0316 614 Pfam Myb-like DNA-binding domain 214 263 IPR001005 -
Tan08g0316 614 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Tan08g0316 614 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0309 Tan-Chr8:2772898 Tan08g0316 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0316 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0315 Tan-Chr8:2772898 Tan08g0316 Tan-Chr8:2772898 8.30E-302 tandem
Tan08g0316 Tan-Chr8:2772898 Tan08g0317 Tan-Chr8:2772898 1.30E-273 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28094 PF00072 Response_reg 4.00E-25 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0316 K14491 - csv:101203718 782.711