Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0319 | ATGGGGATATGGACCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATACCATGCTTATGTTGTCTATTGCAGTTACAACGACCAATCAGGCGGTTCAGGCACTTACAATGTTGAGGGAAAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTGAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGTATCATCAAGGCGTTTCCTTTTTTCATACGTATATTCAATTATTCTCCTACTTTATATTCAGATTACATGA | 1824 | 42.43 | MGIWTSFLLVCVFLLWMMTPFALRFWRICFVNVNTMLMLSIAVTTTNQAVQALTMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQVSSRRFLFSYVYSIILLLYIQIT | 607 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2772898 | 2777527 | - | Tan0003810.12 | Tan08g0319 | 760211 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0319 | 607 | PIRSF | RR_ARR_type-B | 27 | 593 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Tan08g0319 | 607 | SUPERFAMILY | Homeodomain-like | 201 | 261 | IPR009057 | - | |
Tan08g0319 | 607 | ProSiteProfiles | Response regulatory domain profile. | 18 | 133 | IPR001789 | GO:0000160(InterPro) | |
Tan08g0319 | 607 | CDD | REC_typeB_ARR-like | 29 | 133 | - | - | |
Tan08g0319 | 607 | Pfam | Myb-like DNA-binding domain | 207 | 256 | IPR001005 | - | |
Tan08g0319 | 607 | Gene3D | - | 33 | 172 | - | - | |
Tan08g0319 | 607 | SUPERFAMILY | CheY-like | 39 | 142 | IPR011006 | - | |
Tan08g0319 | 607 | Gene3D | - | 200 | 263 | - | - | |
Tan08g0319 | 607 | FunFam | Two-component response regulator | 200 | 263 | - | - | |
Tan08g0319 | 607 | Pfam | Response regulator receiver domain | 41 | 127 | IPR001789 | GO:0000160(InterPro) | |
Tan08g0319 | 607 | MobiDBLite | consensus disorder prediction | 165 | 203 | - | - | |
Tan08g0319 | 607 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 33 | 263 | IPR045279 | GO:0009736(InterPro) | |
Tan08g0319 | 607 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 201 | 260 | IPR017930 | - | |
Tan08g0319 | 607 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 204 | 257 | IPR006447 | GO:0003677(InterPro) | |
Tan08g0319 | 607 | SMART | REC_2 | 26 | 129 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0315 | Tan-Chr8:2772898 | Tan08g0319 | Tan-Chr8:2772898 | 0.00E+00 | dispersed | |
Tan08g0319 | Tan-Chr8:2772898 | Tan08g0322 | Tan-Chr8:2772898 | 1.80E-304 | dispersed | |
Tan08g0318 | Tan-Chr8:2772898 | Tan08g0319 | Tan-Chr8:2772898 | 0.00E+00 | tandem | |
Tan08g0319 | Tan-Chr8:2772898 | Tan08g0320 | Tan-Chr8:2772898 | 6.30E-265 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28097 | PF00072 | Response_reg | 4.60E-18 | CL0304 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0319 | K14491 | - | csv:101203718 | 692.96 |