Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0320 ATGGTTCTAGTGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGGTACTTCCCATAACTTGAGTAGCTCATTAAATATACTTGGGAAACCTCATCCAGCTCTCTTGCTGGCAAACCAACCGCCGAGCATATTCAACGGTGTTTCGACACCATTGGATCACATCCAGTTGCATCGGGACAAACACACTATGCCACTTAAAGAGTCTAATTTGATAAATGATGCCTTGAGTTTTACAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGATGAATTTGGATTTTGA 1719 42.47 MVLVLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQGTSHNLSSSLNILGKPHPALLLANQPPSIFNGVSTPLDHIQLHRDKHTMPLKESNLINDALSFTVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQDQDQSIQINDEFGF 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2772898 2777527 - Tan0003810.13 Tan08g0320 760212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0320 572 NCBIfam myb-like DNA-binding domain, SHAQKYF class 114 167 IPR006447 GO:0003677(InterPro)
Tan08g0320 572 Gene3D - 1 83 - -
Tan08g0320 572 ProSiteProfiles Response regulatory domain profile. 1 43 IPR001789 GO:0000160(InterPro)
Tan08g0320 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 170 IPR017930 -
Tan08g0320 572 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 33 359 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan08g0320 572 SUPERFAMILY Homeodomain-like 111 171 IPR009057 -
Tan08g0320 572 SUPERFAMILY CheY-like 2 52 IPR011006 -
Tan08g0320 572 Gene3D - 110 173 - -
Tan08g0320 572 FunFam Two-component response regulator 110 173 - -
Tan08g0320 572 MobiDBLite consensus disorder prediction 75 113 - -
Tan08g0320 572 Pfam Myb-like DNA-binding domain 117 166 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0311 Tan-Chr8:2772898 Tan08g0320 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0320 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 6.5e-312 dispersed
Tan08g0319 Tan-Chr8:2772898 Tan08g0320 Tan-Chr8:2772898 6.30E-265 tandem
Tan08g0320 Tan-Chr8:2772898 Tan08g0321 Tan-Chr8:2772898 4.10E-266 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28098 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0320 K14491 - csv:101203718 806.979