Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0322 ATGACTGTGGAGGATCGAAGGTCTAATTTGGTGGGTGAAAATGGGGATATGGACCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATACCATGTTACAACGACCAATCAGGCGGTTCAGGCACTTACAATGTTGAGGGAAAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTGAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAATATATGGCAACATGTTCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATGACACTTGTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACCAAGGCGACAATGAGGAAGGAGATGAAGAAGAGAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGAAAAGGGTACTTTGGGATCGAGAGTTGCACAGGAAGTTTCTTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAGGATCCTCGATCTGATGAATGTGGAAGACCTTACAAGAGAAAACGTTGCTAGCCATCTTCAGAAATACAGGCAGGGCCTCAAAAAAATGAGTTACCTAAAAAAAATGAGTACTCAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGATACCTCCTTCAGCCCCATGGCTTCACTCAACGGATTTTCAATGGCTGGAACGGGAAGGCTCTCGAATGCTACATTCTCATCGTATTCCTCTCGAATTGCTTCCTCTGGAATGATCCAACAAGGTACTTCCCATAACTTGAGTAGCTCATTAAATATACTTGGGAAACCTCATCCAGCTCTCTTGCTGGCAAACCAACCGCCGAGCATATTCAACGGTGTTTCGACACCATTGGATCACATCCAGTTGCATCGGGACAAACACACTATGCCACTTAAAGAGTCTAATTTGATAAATGATGCCTTGAGTTTTACAGTTTCCACCAGCTTCCCCGATGCTAGAGTGAATGTTGGTAGCTCGAGCAATTATGATTTTGGTGTTTCGAGCCGTCGGTTGATGTTACAAGGGCATAAGCAACAGATTCATGGCAGTGAAGAATTTGGAGATCAGTCTTCTCTTAAGGTATCTCTAATCAAACCAGAACCCTTAGACCGCAGCACAGACGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAGAACTGGCAGGGTGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCAATTAATTTGACAATTTCTTCAGTTCAACCCGATAACAAAGACTTTCCTGTCGGTTTTCCTTCGACAAGTGTGGATTCGAGTTCTCAGCTTGATTTTAGGGAGGAGACACAATGCTATGAAGAATTAATTGGTAGTGTTGTTGAAGCCATGAATGGCAGATCAAAGCAACAATGGGAAGCAGCTAAACAGGATTGCTATGGCAACCATTGTTCTATATTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAGAACCCTTGAACCAGAGTGCAGCAGATCAGAACAATGCAATTCACCTCGAAAATGTCAGCAGCTCTTTGACTAACCAATTGAATAATGGTGTTCCAACCTTCATTCAGCACGGTATGGAAATGTCGATCATGGACACTTGGATGAACCCCGACGGGAAAATTCTCATGGATCCAACAAAGCTACATAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGTCGAAACAGGTATCATCAAGGCGTTTCCTTTTTTCATACGTATATTCAATTATTCTCCTACTTTATATTCAGATTACATGA 2037 42.56 MTVEDRRSNLVGENGDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALTMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNDTCCQTVEVAKGFPSAVSADNGKPGKRRKDQGDNEEGDEEESTYENDDSSTQKKKRVLWDRELHRKFLAAVNHLGYEKAVPKRILDLMNVEDLTRENVASHLQKYRQGLKKMSYLKKMSTQEAQQCNMMAAFGDTSFSPMASLNGFSMAGTGRLSNATFSSYSSRIASSGMIQQGTSHNLSSSLNILGKPHPALLLANQPPSIFNGVSTPLDHIQLHRDKHTMPLKESNLINDALSFTVSTSFPDARVNVGSSSNYDFGVSSRRLMLQGHKQQIHGSEEFGDQSSLKVSLIKPEPLDRSTDVSNILGHGQSNKNWQGVSLTGIYPPDGMPAINLTISSVQPDNKDFPVGFPSTSVDSSSQLDFREETQCYEELIGSVVEAMNGRSKQQWEAAKQDCYGNHCSILRNSLVSGNSVAEPLNQSAADQNNAIHLENVSSSLTNQLNNGVPTFIQHGMEMSIMDTWMNPDGKILMDPTKLHNGFANSSFNSLDELVNALSKQVSSRRFLFSYVYSIILLLYIQIT 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2772898 2777527 - Tan0003810.15 Tan08g0322 760214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0322 678 Gene3D - 24 178 - -
Tan08g0322 678 Pfam Myb-like DNA-binding domain 214 263 IPR001005 -
Tan08g0322 678 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Tan08g0322 678 CDD REC_typeB_ARR-like 26 140 - -
Tan08g0322 678 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Tan08g0322 678 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Tan08g0322 678 FunFam Two-component response regulator 207 270 - -
Tan08g0322 678 MobiDBLite consensus disorder prediction 172 210 - -
Tan08g0322 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tan08g0322 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 327 IPR045279 GO:0009736(InterPro)
Tan08g0322 678 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Tan08g0322 678 SUPERFAMILY CheY-like 23 149 IPR011006 -
Tan08g0322 678 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Tan08g0322 678 Gene3D - 207 270 - -
Tan08g0322 678 PIRSF RR_ARR_type-B 1 662 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0310 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0313 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0314 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0316 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0318 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 0.00E+00 dispersed
Tan08g0319 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 1.80E-304 dispersed
Tan08g0320 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 6.5e-312 dispersed
Tan08g0322 Tan-Chr8:2772898 Tan09g1541 Tan-Chr9:67275508 4.30E-153 dispersed
Tan08g0321 Tan-Chr8:2772898 Tan08g0322 Tan-Chr8:2772898 4.00E-276 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28100 PF00072 Response_reg 4.70E-25 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0322 K14491 - csv:101203718 962.985