Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0349 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGGGCAAGTTCTGTAAGTAATAATAGCAAGCCATGGCCTATGCATTGTGAATTTTTGGAGAACCAGATGGGGAATCCTGATAAGGAGCCTGCTCTTAGTGGAACTAGCGACCGAAGCCGTTCTGGGAATTCTTTTCCTCTTGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAGGAAAGAGAATCCATCTCCTTTTGTTCCTCTACTTAGATCAGGAGAATGGTCTGATATTGGAAAGCGTCCTTATATGGAGGACACTCATGTGTGCATTCATGACATGGCTAAGAAGTTTGGCTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTCGATGGTCATGGAGGAAAAAGTGCTGCACAATTTGTTCGTGACCACTTGCCGAGAGTTATTGTTGAAGATTCCGATTTTCCGTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACCCTTGAGACATCCCTGTCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGATCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCAGTATTATCAAGACAAGGATGTGCAATAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAACGAAAGCGAATCGAGGCCTTGGGTGGATTCATTGATGATGATTATCTAAACGGCCTGCTTGGGGTCACTCGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCGTTGAGTGCCGAACCTGAACTTAGATTAATGACACTGACGAAGGAGGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGACGTCTTCACAAGTCAAAACGCTGTCGACTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAAATTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGCAGTCTTGGTTAGTTTTCACATGGAGCCACCTCCACCTGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATTTCAGCAGAGGGACTTCAGAACCTCAAATTTCTGCTAGAAGGATAG 1146 44.59 MCVTDAEQVGTERASSVSNNSKPWPMHCEFLENQMGNPDKEPALSGTSDRSRSGNSFPLESISEDAAVIDRKENPSPFVPLLRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKNCCKEIVEEAIKRGATDNLTAVLVSFHMEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3108855 3113927 - Tan0012500.1 Tan08g0349 760241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0349 381 CDD PP2Cc 83 348 IPR001932 -
Tan08g0349 381 MobiDBLite consensus disorder prediction 1 58 - -
Tan08g0349 381 MobiDBLite consensus disorder prediction 9 23 - -
Tan08g0349 381 SMART PP2C_4 73 346 IPR001932 -
Tan08g0349 381 Gene3D - 68 351 IPR036457 -
Tan08g0349 381 PANTHER PROTEIN PHOSPHATASE 2C 81 348 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan08g0349 381 FunFam Probable protein phosphatase 2C 22 66 351 - -
Tan08g0349 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169(InterPro)
Tan08g0349 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Tan08g0349 381 SUPERFAMILY PP2C-like 74 349 IPR036457 -
Tan08g0349 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5129 Tan-Chr1:116626684 Tan08g0349 Tan-Chr8:3108855 1.60E-88 dispersed
Tan06g0476 Tan-Chr6:3471131 Tan08g0349 Tan-Chr8:3108855 1.80E-33 dispersed
Tan06g0477 Tan-Chr6:3471131 Tan08g0349 Tan-Chr8:3108855 1.80E-33 dispersed
Tan06g2803 Tan-Chr6:80128457 Tan08g0349 Tan-Chr8:3108855 1.70E-66 dispersed
Tan08g0349 Tan-Chr8:3108855 Tan08g1277 Tan-Chr8:42487673 5.40E-36 dispersed
Tan10g1000 Tan-Chr10:8824062 Tan08g0349 Tan-Chr8:3108855 4.20E-07 dispersed
Tan08g0349 Tan-Chr8:3108855 Tan08g1276 Tan-Chr8:42487673 5.40E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28101 PF00481 PP2C 4.10E-68 CL0238 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0349 K14803 - csv:101210349 703.36