Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0367 ATGAGACTCACCAACTCCCTCCCTGACCTCCATAGCCACCGCCGTAACCGGCCGCCGGAGACCGACGCCTCTCAACTCCGCCACCTTCAAACCTCCCATTTCCATCCCCCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATTCCCCCTCCCTGGGAACTCCCTGACGGTCTCCCAAATCCCCACTCCGACCTCCCTCTCCAGCCACGGCCGCCGCCAAATCCCGACAATGCGGCCTTTCAGATCGGCGACACCAGTCCGGCCGCCAAAATGGCTATGACCATGCTTCACCAGCAGTTACTCGCCACCGCAGCCGGAGATTCCAGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAGTCGAAGGCTCTTCGTCCTTCGAATGCCCTAATCCGATTATTGGCGACGGTTCTGCTATTCCGTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGCTCCGGCCATAACCAGAACCAGAACCAGAATCAATCTCAGGGAAACTCAAATTCAACTTCACAGAAACAGAGCTTCGGAGCTCCGGTATCAGTCAATACTCCACCTCCGGCCGCGACTGGTTCCGGCGGTGGTGCTGCAGCAACGGCGCAGCCGCGGCAGAGAGTCAGAGCTCGAAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAATTGGTTCCCAACGCTAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGATTGGGCGTTGCCACTGCAGCAATGCCCAATTCCCAACTTCTAGCCGATATTTCCTCTGAGGGAGGGACTGACTGTAACCAGACCAACGGAACCGGTGTGGCCGGCGGACAGACCTCCGCCGGAGCTCCGTCAAGTAACGACGCGATGACGGTAACAGAGCACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCCCTCGCCACCGCCATCTCCACCGCCACGTGTCACAGCCGCCCCATCACAGCACCCAAGGGCGGCGGAGAATGCCCCACTTCCCCCAGTCTGTCCGCGTTGACTGTTCAGTCAATCGCTTTGGGTAATAACACCGTCAAAGACTCAACTCCTGTTTCACGACAGTGA 1251 56.27 MRLTNSLPDLHSHRRNRPPETDASQLRHLQTSHFHPPSFSSDDFLDQILSSIPPPWELPDGLPNPHSDLPLQPRPPPNPDNAAFQIGDTSPAAKMAMTMLHQQLLATAAGDSSLLPMPGNDVVEVEGSSSFECPNPIIGDGSAIPSLFNEFAGFLNASGSGHNQNQNQNQSQGNSNSTSQKQSFGAPVSVNTPPPAATGSGGGAAATAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGVATAAMPNSQLLADISSEGGTDCNQTNGTGVAGGQTSAGAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITAPKGGGECPTSPSLSALTVQSIALGNNTVKDSTPVSRQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3281662 3288499 + Tan0006292.1 Tan08g0367 760259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0367 416 MobiDBLite consensus disorder prediction 56 80 - -
Tan08g0367 416 MobiDBLite consensus disorder prediction 158 225 - -
Tan08g0367 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 366 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan08g0367 416 MobiDBLite consensus disorder prediction 1 80 - -
Tan08g0367 416 Pfam Helix-loop-helix DNA-binding domain 225 270 IPR011598 GO:0046983(InterPro)
Tan08g0367 416 Gene3D - 217 287 IPR036638 GO:0046983(InterPro)
Tan08g0367 416 FunFam Transcription factor bHLH66 217 282 - -
Tan08g0367 416 MobiDBLite consensus disorder prediction 23 47 - -
Tan08g0367 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 281 IPR036638 GO:0046983(InterPro)
Tan08g0367 416 MobiDBLite consensus disorder prediction 7 22 - -
Tan08g0367 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983(InterPro)
Tan08g0367 416 MobiDBLite consensus disorder prediction 158 196 - -
Tan08g0367 416 SMART finulus 226 275 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0367 Tan-Chr8:3281662 Tan09g1547 Tan-Chr9:67332375 2.50E-71 dispersed
Tan09g2080 Tan-Chr9:71188626 Tan08g0367 Tan-Chr8:3281662 6.50E-09 dispersed
Tan09g2081 Tan-Chr9:71188626 Tan08g0367 Tan-Chr8:3281662 5.80E-09 dispersed
Tan11g1396 Tan-Chr11:12413439 Tan08g0367 Tan-Chr8:3281662 8.10E-13 dispersed
Tan08g0367 Tan-Chr8:3281662 Tan08g0368 Tan-Chr8:3281662 6.60E-189 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28103 PF00010 HLH 1.60E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0367 - - - 0.0