Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0368 ATGAGACTCACCAACTCCCTCCCTGACCTCCATAGCCACCGCCGTAACCGGCCGCCGGAGACCGACGCCTCTCAACTCCGCCACCTTCAAACCTCCCATTTCCATCCCCCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATTCCCCCTCCCTGGGAACTCCCTGACGGTCTCCCAAATCCCCACTCCGACCTCCCTCTCCAGCCACGGCCGCCGCCAAATCCCGACAATGCGGCCTTTCAGATCGGCGACACCAGTCCGGCCGCCAAAATGGCTATGACCATGCTTCACCAGCAGTTACTCGCCACCGCAGCCGGAGATTCCAGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAGTCGAAGGCTCTTCGTCCTTCGAATGCCCTAATCCGGTACTCATAATCGAACTCTCAAATCCAATCTCTAACCATTCAATTCCAAAATTAGGTTTCGAATTAGTACCAAACCAATTAAATTCCTGTAAATTAATCGCGTCGTCTTTGCAGATTATTGGCGACGGTTCTGCTATTCCGTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGCTCCGGCCATAACCAGAACCAGAACCAGAATCAATCTCAGGGAAACTCAAATTCAACTTCACAGAAACAGAGCTTCGGAGCTCCGGTATCAGTCAATACTCCACCTCCGGCCGCGACTGGTTCCGGCGGTGGTGCTGCAGCAACGGCGCAGCCGCGGCAGAGAGTCAGAGCTCGAAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAATTGGTTCCCAACGCTAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGATTGGGCGTTGCCACTGCAGCAATGCCCAATTCCCAACTTCTAGCCGATATTTCCTCTGAGGGAGGGACTGACTGTAACCAGACCAACGGAACCGGTGTGGCCGGCGGACAGACCTCCGCCGGAGCTCCGTCAAGTAACGACGCGATGACGGTAACAGAGCACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCCCTCGCCACCGCCATCTCCACCGCCACGTGTCACAGCCGCCCCATCACAGCACCCAAGGGCGGCGGAGAATGCCCCACTTCCCCCAGTCTGTCCGCGTTGACTGTTCAGTCAATCGCTTTGGGTAATAACACCGTCAAAGACTCAACTCCTGTTTCACGACAGTGA 1365 54.43 MRLTNSLPDLHSHRRNRPPETDASQLRHLQTSHFHPPSFSSDDFLDQILSSIPPPWELPDGLPNPHSDLPLQPRPPPNPDNAAFQIGDTSPAAKMAMTMLHQQLLATAAGDSSLLPMPGNDVVEVEGSSSFECPNPVLIIELSNPISNHSIPKLGFELVPNQLNSCKLIASSLQIIGDGSAIPSLFNEFAGFLNASGSGHNQNQNQNQSQGNSNSTSQKQSFGAPVSVNTPPPAATGSGGGAAATAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGVATAAMPNSQLLADISSEGGTDCNQTNGTGVAGGQTSAGAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITAPKGGGECPTSPSLSALTVQSIALGNNTVKDSTPVSRQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3281662 3288499 + Tan0006292.2 Tan08g0368 760260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0368 454 MobiDBLite consensus disorder prediction 55 81 - -
Tan08g0368 454 MobiDBLite consensus disorder prediction 56 80 - -
Tan08g0368 454 MobiDBLite consensus disorder prediction 197 263 - -
Tan08g0368 454 Gene3D - 255 325 IPR036638 GO:0046983(InterPro)
Tan08g0368 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 404 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan08g0368 454 MobiDBLite consensus disorder prediction 1 41 - -
Tan08g0368 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 319 IPR036638 GO:0046983(InterPro)
Tan08g0368 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983(InterPro)
Tan08g0368 454 MobiDBLite consensus disorder prediction 7 22 - -
Tan08g0368 454 MobiDBLite consensus disorder prediction 23 41 - -
Tan08g0368 454 FunFam Transcription factor bHLH66 255 320 - -
Tan08g0368 454 MobiDBLite consensus disorder prediction 197 234 - -
Tan08g0368 454 Pfam Helix-loop-helix DNA-binding domain 263 308 IPR011598 GO:0046983(InterPro)
Tan08g0368 454 SMART finulus 264 313 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0368 Tan-Chr8:3281662 Tan09g1547 Tan-Chr9:67332375 2.60E-69 dispersed
Tan08g0367 Tan-Chr8:3281662 Tan08g0368 Tan-Chr8:3281662 6.60E-189 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28104 PF00010 HLH 1.80E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0368 - - - 0.0