Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0370 ATGGCGGATAAAGGCAGAGACGGCGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCACGGGACCTTCGCCAAGGTCTACCATGCCCGGAATCTACGAACAGGGAAGAACGTTGCGATGAAAGTGGTTGGGAAGGAGAAGATTATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGGAGCATCCGAATATTGTGGAGCTTCACGAGGTGATGGCGAGTAAATCGAAGATCTACTTCGCGATGGAGCTTGTGAGAGGCGGCGAACTGTTCTCCAAAATCGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATATCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGCGATCTGAAACCGGAGAATCTCCTCCTCGACGAAGATGGTAACCTTAAGGTCACTGATTTCGGCCTCACTGCCTTCTCAGAGCACTTGAAGCAGGACGGATTGTTGCATACGACTTGCGGAACTCCGGCGTATGTCGCGCCGGAGGTCATCGGAAAGCAAGGATACGACGGCGCCAAGGCGGATCTGTGGTCTTGTGGAGTCATCCTCTACGTTCTTCTCGCCGGATACCTTCCATTTCAGGACGACAATATAGTGGCGATGTACAGGAAAATTTACAGAGGCGACTTCAAATGTCCGCCGTGGTTCTCTCCCGATGCCCGCCGTCTCATCACGAAGCTTCTCGACCCGAATCCGGTGACCAGAATCGGAATCGCGAAGATCACATCATCGTCGTGGTTCAAGAAATCGGTACCAAAGACAATGATCACAAAGGAAGAACAAGAGCAAACCGAGGAGAATTTCACGAAATCAAAGCAACCGGCGGAGACATTAAACGCATTCCACATAATTTCGCTATCGGAAGGGTTCGATCTATCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCATCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCAAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAGTCGTGGGTTCGATTGCAGGGGCAAGAGAAGGGGAGGAAAGGGAAACTGGCGATTGCGGCGGATATCTTCGCCATGACGCCGTCGTTTGTGGTGGTGGAAGTGAAGAAGGACAACGGAGATACTCTAGAGTACAACCAGTTCTGCCGGACGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACTTCTCCGACTGGGAATTCAACCCCAGTTTGA 1302 51.77 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKNVAMKVVGKEKIIKVGMTEQIKREISVMKMVEHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNIVAMYRKIYRGDFKCPPWFSPDARRLITKLLDPNPVTRIGIAKITSSSWFKKSVPKTMITKEEQEQTEENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKAVKFDVKKSESWVRLQGQEKGRKGKLAIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRTELRPALKDIVWTSPTGNSTPV 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3345695 3347733 - Tan0013406.1 Tan08g0370 760262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0370 433 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Tan08g0370 433 Gene3D Transferase(Phosphotransferase) domain 1 100 299 - -
Tan08g0370 433 CDD CIPK_C 304 419 - -
Tan08g0370 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan08g0370 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0370 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Tan08g0370 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Tan08g0370 433 Gene3D Kinase associated domain 1, KA1 300 424 - -
Tan08g0370 433 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0370 433 SUPERFAMILY Protein kinase-like (PK-like) 15 289 IPR011009 -
Tan08g0370 433 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Tan08g0370 433 CDD STKc_SnRK3 17 271 - -
Tan08g0370 433 FunFam Non-specific serine/threonine protein kinase 283 423 - -
Tan08g0370 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Tan08g0370 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0370 433 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
Tan08g0370 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2584 Tan-Chr3:78982431 Tan08g0370 Tan-Chr8:3345695 7.30E-144 dispersed
Tan05g0537 Tan-Chr5:3755413 Tan08g0370 Tan-Chr8:3345695 1.20E-121 dispersed
Tan06g2471 Tan-Chr6:77368857 Tan08g0370 Tan-Chr8:3345695 7.00E-101 dispersed
Tan08g0370 Tan-Chr8:3345695 Tan10g0068 Tan-Chr10:1022351 2.60E-127 dispersed
Tan08g0370 Tan-Chr8:3345695 Tan09g1553 Tan-Chr9:67372585 1.50E-212 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67924 PF00069 Pkinase 4.40E-72 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0370 - - - 0.0