Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0388 ATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCCGGAGTTGATCATACATCAACAAGCTCCTCTGCCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGCGGACCTGTTAACAGCAGCGGTGGCGATGACGATGATGATAGGGATAACGGAGGTGATGAGCCTAAAGAAGGAGCTGTTGAAGTTCCGACGCGCCGCCCTCGCGGCCGACCGCCGGGCTCTAAGAACAAGCCCAAGCCACCTATCTTTGTTACTCGAGATAGCCCTAATGCCCTAAAAAGTCATGTAATGGAGATTTCTAATGGGGCTGATATTGCTGAGAGTGTTGCTCAATTTGCTCGACGGCGACAAAAAGGGGTTTCTGTGCTTAGTGGCAGCGGCACGGTAACGAATGTGACGCTCCGACAACCGTCCGCGCCCGGTGCAGTCTTGACCCTCCATGGCCGATTCGAGATTCTCTCTTTAACTGGAACTTTCCTCCCTGGACCGGCCCCGCCCGGCTCGACGGGACTGACGATCTACTTGGCTGGTGGCCAAGGGCAGGTGGTCGGTGGCAGCGTCGTCGGTCCACTCACCGCTGCCGGCCCGGTGATGGTGATTGCTGCAACATTTTCCAATGCGACATACGAGCGACTACCTTTGGAAGAGGAGGAAGAAGGCGGCGGCGGAGCACAAGGGCACGCATCGACAGGCGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGTGGCGGAGTCGGAGATCCATCAGCTATGCCACCGCTGTACAATTTACCGCCGAATTTGCTGCCGAATGGCGGCGGTGGGCAGATGAACCAGGAGGCGTATTCTTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 876 57.88 MANRWWTSGQMGLPGVDHTSTSSSAMRKPDLGISMNDNGGPVNSSGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQKGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGGAQGHASTGGGAGDGSPQGIGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3505718 3507399 - Tan0022321.1 Tan08g0388 760280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0388 291 CDD DUF296 98 181 IPR005175 -
Tan08g0388 291 MobiDBLite consensus disorder prediction 219 291 - -
Tan08g0388 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Tan08g0388 291 MobiDBLite consensus disorder prediction 13 29 - -
Tan08g0388 291 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Tan08g0388 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 289 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan08g0388 291 PIRSF ESCAROLA 11 291 IPR014476 GO:0003680(InterPro)
Tan08g0388 291 MobiDBLite consensus disorder prediction 1 94 - -
Tan08g0388 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 210 IPR005175 -
Tan08g0388 291 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Tan08g0388 291 Gene3D - 98 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2437 Tan-Chr6:76823675 Tan08g0388 Tan-Chr8:3505718 2.80E-65 dispersed
Tan07g1966 Tan-Chr7:71441659 Tan08g0388 Tan-Chr8:3505718 3.80E-60 dispersed
Tan08g0388 Tan-Chr8:3505718 Tan10g0419 Tan-Chr10:3375213 1.50E-59 dispersed
Tan08g0383 Tan-Chr8:3461902 Tan08g0388 Tan-Chr8:3505718 1.30E-18 proximal
Tan09g0758 Tan-Chr9:57890886 Tan08g0388 Tan-Chr8:3505718 3.60E-36 transposed
Tan11g0207 Tan-Chr11:1733777 Tan08g0388 Tan-Chr8:3505718 3.80E-58 transposed
Tan10g0717 Tan-Chr10:5902568 Tan08g0388 Tan-Chr8:3505718 6.00E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0388 - - - 0.0