Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0477 ATGGGATGTATAAGTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCGAGGATAAGAAGGAGAAGAGTTCTGAATGTGGTGATGATTTGGAAAGGAAGGAAGCTGATGTGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCCCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGACTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGGTTCCTAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAACGTGTACAAAGCAAAAGATATACTGACTGGTAAAGTTGTTGCACTGAAGAAGGTTCGATTTGACAATTTAGAGCCAGAAAGTGTGAGATTTATGGCTAGAGAGATTCTCATTTTGCGGCGCCTAGATCATCCTAATGTTGTGAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTATATGGAGCATGATTTAGCTGGACTTGCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTGCTATCAGGACTTGAGCATTGTCACAGCCATAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGATGCTTAAGATTGCTGACTTTGGACTTGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCTGAGCTTCTACTAGGTGCAACTCATTATGATGTAGGCATCGACCTTTGGAGCGCAGGTTGTATTTTTGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGGACAGAGTTTTTCACCACAGAACCTTATGCGTGTGAACCTTCTAGCCTCCCCAAATATCCACCCAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCGCGAAGACAAAGAGCAACAAGTAAATTGCAGAATGATCGTGCAAAGAAGACACGCACACGTAACCGTGCTGGTAGGGCCATTCCCATTCAAGGTGCCAATGCAGAACTCCAATCAAATATAGATAGACGACGTTTAATTACTCACGCAAATGCAAAGAGCAAGAGTGAAAAGTTCCCCCCTCCACATCAGGACGGGGCACTCGGATTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCATTTAGTTCCACATCGTTTGGCTATCCAAACGATTTGGACCGAGCCTGGTCCGGACCATTGGTCGAGTCTTCTGACATTGGTGCTCAGAGGCAGAAGCCTTTGGGAGGTGATGCAAGGAACAATCCAGCCAATCTTCAGTTAAAGGGAAAAGGGCAGCATGAACTTCACATCACATAA 1479 45.37 MGCISSREVASRNLADSEDKKEKSSECGDDLERKEADVAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGMLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYDVGIDLWSAGCIFAELLAGRPIMPGRTEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRATSKLQNDRAKKTRTRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNDLDRAWSGPLVESSDIGAQRQKPLGGDARNNPANLQLKGKGQHELHIT 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4586059 4592830 + Tan0016467.2 Tan08g0477 760369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0477 492 SMART serkin_6 109 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0477 492 MobiDBLite consensus disorder prediction 67 81 - -
Tan08g0477 492 Pfam Protein kinase domain 109 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0477 492 ProSiteProfiles Protein kinase domain profile. 109 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0477 492 MobiDBLite consensus disorder prediction 12 44 - -
Tan08g0477 492 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Tan08g0477 492 MobiDBLite consensus disorder prediction 1 81 - -
Tan08g0477 492 Gene3D Transferase(Phosphotransferase) domain 1 192 383 - -
Tan08g0477 492 MobiDBLite consensus disorder prediction 325 369 - -
Tan08g0477 492 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Tan08g0477 492 SUPERFAMILY Protein kinase-like (PK-like) 103 316 IPR011009 -
Tan08g0477 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0477 492 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Tan08g0477 492 MobiDBLite consensus disorder prediction 463 492 - -
Tan08g0477 492 MobiDBLite consensus disorder prediction 52 66 - -
Tan08g0477 492 MobiDBLite consensus disorder prediction 335 364 - -
Tan08g0477 492 FunFam Mitogen-activated protein kinase 190 320 - -
Tan08g0477 492 PANTHER CELL DIVISION PROTEIN KINASE 108 316 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0477 Tan-Chr8:4586059 Tan08g0479 Tan-Chr8:4586059 4.60E-290 dispersed
Tan08g0476 Tan-Chr8:4586059 Tan08g0477 Tan-Chr8:4586059 8.50E-280 tandem
Tan08g0477 Tan-Chr8:4586059 Tan08g0478 Tan-Chr8:4586059 5.60E-280 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67929 PF00069 Pkinase 4.20E-61 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0477 K08819 - csv:101217497 819.305