Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0478 | ATGGGATGTATAAGTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCGAGGATAAGAAGGAGAAGAGTTCTGAATGTGGTGATGATTTGGAAAGGAAGGAAGCTGATGTGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCCCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGACTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGGTTCCTAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAACGTGTACAAAGCAAAAGATATACTGACTGGTAAAGTTGTTGCACTGAAGAAGGTTCGATTTGACAATTTAGAGCCAGAAAGTGTGAGATTTATGGCTAGAGAGATTCTCATTTTGCGGCGCCTAGATCATCCTAATGTTGTGAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTATATGGAGCATGATTTAGCTGGACTTGCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTGCTATCAGGACTTGAGCATTGTCACAGCCATAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGATGCTTAAGATTGCTGACTTTGGACTTGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCTGAGCTTCTACTAGGTGCAACTCATTATGATGTAGGCATCGACCTTTGGAGCGCAGGTTGTATTTTTGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGGACAGAGGTTGAGCAGCTACATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAATATTTAAAGAGAGCGAAGTTGCCCAATGCATCCTTATTTAGGCCTCGAGAGCCTTATAAGAGATGCATAAAAGAGATTTTTAAAGATTTCCCACCATCGTCATTTCCTCTTATAGATACACTTCTTGCAATTGATCCTTCTGAGAGAATGACAGCTACAGATGCATTAAAGAGCGAGTTTTTCACCACAGAACCTTATGCGTGTGAACCTTCTAGCCTCCCCAAATATCCACCCAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCGCGAAGACAAAGAGCAACAAGTAAATTGCAGAATGATCGTGCAAAGAAGACACGCACACGTAACCGTGCTGGTAGGGCCATTCCCATTCAAGGTGCCAATGCAGAACTCCAATCAAATATAGATAGACGACGTTTAATTACTCACGCAAATGCAAAGAGCAAGAGTGAAAAGTTCCCCCCTCCACATCAGGACGGGGCACTCGGATTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCATTTAGTTCCACATCGTTTGGCTATCCAAACGATTTGGACCGAGCCTGGTCCGGACCATTGGTCGAGTCTTCTGACATTGGTGCTCAGAGGCAGAAGCCTTTGGGAGGTGATGCAAGGAACAATCCAGCCAATCTTCAGTTAAAGGGAAAAGGGCAGCATGAACTTCACATCACATAA | 1707 | 44.58 | MGCISSREVASRNLADSEDKKEKSSECGDDLERKEADVAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGMLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYDVGIDLWSAGCIFAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNASLFRPREPYKRCIKEIFKDFPPSSFPLIDTLLAIDPSERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRATSKLQNDRAKKTRTRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNDLDRAWSGPLVESSDIGAQRQKPLGGDARNNPANLQLKGKGQHELHIT | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4586059 | 4592830 | + | Tan0016467.3 | Tan08g0478 | 760370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 67 | 81 | - | - | |
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 12 | 44 | - | - | |
Tan08g0478 | 568 | FunFam | probable serine/threonine-protein kinase At1g54610 | 96 | 191 | - | - | |
Tan08g0478 | 568 | PANTHER | CELL DIVISION PROTEIN KINASE | 108 | 393 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Tan08g0478 | 568 | SMART | serkin_6 | 109 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g0478 | 568 | CDD | STKc_CDK9_like | 109 | 393 | - | - | |
Tan08g0478 | 568 | Pfam | Protein kinase domain | 109 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 400 | 445 | - | - | |
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 539 | 568 | - | - | |
Tan08g0478 | 568 | FunFam | probable serine/threonine-protein kinase At1g54610 | 192 | 433 | - | - | |
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Tan08g0478 | 568 | ProSiteProfiles | Protein kinase domain profile. | 109 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 411 | 440 | - | - | |
Tan08g0478 | 568 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 191 | - | - | |
Tan08g0478 | 568 | ProSitePatterns | Protein kinases ATP-binding region signature. | 115 | 138 | IPR017441 | GO:0005524(InterPro) | |
Tan08g0478 | 568 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 229 | 241 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan08g0478 | 568 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
Tan08g0478 | 568 | SUPERFAMILY | Protein kinase-like (PK-like) | 103 | 398 | IPR011009 | - | |
Tan08g0478 | 568 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 433 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0476 | Tan-Chr8:4586059 | Tan08g0478 | Tan-Chr8:4586059 | 0.00E+00 | dispersed | |
Tan08g0478 | Tan-Chr8:4586059 | Tan09g0363 | Tan-Chr9:34041110 | 2.10E-238 | dispersed | |
Tan08g0477 | Tan-Chr8:4586059 | Tan08g0478 | Tan-Chr8:4586059 | 5.60E-280 | tandem | |
Tan08g0478 | Tan-Chr8:4586059 | Tan08g0479 | Tan-Chr8:4586059 | 8.50E-280 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67930 | PF00069 | Pkinase | 3.00E-68 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0478 | K08819 | - | csv:101217497 | 1056.59 |