Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0478 ATGGGATGTATAAGTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCGAGGATAAGAAGGAGAAGAGTTCTGAATGTGGTGATGATTTGGAAAGGAAGGAAGCTGATGTGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCCCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGACTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGGTTCCTAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAACGTGTACAAAGCAAAAGATATACTGACTGGTAAAGTTGTTGCACTGAAGAAGGTTCGATTTGACAATTTAGAGCCAGAAAGTGTGAGATTTATGGCTAGAGAGATTCTCATTTTGCGGCGCCTAGATCATCCTAATGTTGTGAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTATATGGAGCATGATTTAGCTGGACTTGCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTGCTATCAGGACTTGAGCATTGTCACAGCCATAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGATGCTTAAGATTGCTGACTTTGGACTTGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCTGAGCTTCTACTAGGTGCAACTCATTATGATGTAGGCATCGACCTTTGGAGCGCAGGTTGTATTTTTGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGGACAGAGGTTGAGCAGCTACATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAATATTTAAAGAGAGCGAAGTTGCCCAATGCATCCTTATTTAGGCCTCGAGAGCCTTATAAGAGATGCATAAAAGAGATTTTTAAAGATTTCCCACCATCGTCATTTCCTCTTATAGATACACTTCTTGCAATTGATCCTTCTGAGAGAATGACAGCTACAGATGCATTAAAGAGCGAGTTTTTCACCACAGAACCTTATGCGTGTGAACCTTCTAGCCTCCCCAAATATCCACCCAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCGCGAAGACAAAGAGCAACAAGTAAATTGCAGAATGATCGTGCAAAGAAGACACGCACACGTAACCGTGCTGGTAGGGCCATTCCCATTCAAGGTGCCAATGCAGAACTCCAATCAAATATAGATAGACGACGTTTAATTACTCACGCAAATGCAAAGAGCAAGAGTGAAAAGTTCCCCCCTCCACATCAGGACGGGGCACTCGGATTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCATTTAGTTCCACATCGTTTGGCTATCCAAACGATTTGGACCGAGCCTGGTCCGGACCATTGGTCGAGTCTTCTGACATTGGTGCTCAGAGGCAGAAGCCTTTGGGAGGTGATGCAAGGAACAATCCAGCCAATCTTCAGTTAAAGGGAAAAGGGCAGCATGAACTTCACATCACATAA 1707 44.58 MGCISSREVASRNLADSEDKKEKSSECGDDLERKEADVAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGMLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYDVGIDLWSAGCIFAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNASLFRPREPYKRCIKEIFKDFPPSSFPLIDTLLAIDPSERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRATSKLQNDRAKKTRTRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNDLDRAWSGPLVESSDIGAQRQKPLGGDARNNPANLQLKGKGQHELHIT 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4586059 4592830 + Tan0016467.3 Tan08g0478 760370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0478 568 MobiDBLite consensus disorder prediction 67 81 - -
Tan08g0478 568 MobiDBLite consensus disorder prediction 12 44 - -
Tan08g0478 568 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Tan08g0478 568 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan08g0478 568 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0478 568 CDD STKc_CDK9_like 109 393 - -
Tan08g0478 568 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0478 568 MobiDBLite consensus disorder prediction 400 445 - -
Tan08g0478 568 MobiDBLite consensus disorder prediction 539 568 - -
Tan08g0478 568 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Tan08g0478 568 MobiDBLite consensus disorder prediction 1 81 - -
Tan08g0478 568 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0478 568 MobiDBLite consensus disorder prediction 411 440 - -
Tan08g0478 568 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Tan08g0478 568 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Tan08g0478 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0478 568 MobiDBLite consensus disorder prediction 52 66 - -
Tan08g0478 568 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Tan08g0478 568 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0476 Tan-Chr8:4586059 Tan08g0478 Tan-Chr8:4586059 0.00E+00 dispersed
Tan08g0478 Tan-Chr8:4586059 Tan09g0363 Tan-Chr9:34041110 2.10E-238 dispersed
Tan08g0477 Tan-Chr8:4586059 Tan08g0478 Tan-Chr8:4586059 5.60E-280 tandem
Tan08g0478 Tan-Chr8:4586059 Tan08g0479 Tan-Chr8:4586059 8.50E-280 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67930 PF00069 Pkinase 3.00E-68 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0478 K08819 - csv:101217497 1056.59