Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0533 ATGGCATTAGAGGCGGTTGTTTTTTCTCAAGATCCATTAAGTTACAATGGAAGCAAAGATCTTTACAACTTGTTTGGAGGAGGGATTTGGGCAAATGGAAGCTTTGAATACCCTCAAATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTGGCGATTGGAACTCTTCCTCCTCTGTTTTGGCCCCTAACCCTTCCCCTGAAGCTGCCATTTCCAGAAATGGGTTGATCTTCAACGACCCAAATCCGCCATTGGAGCCCGAATCAAGAACTCCAAATCCAATTCGGCCGAGAAAACGACGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGATTCTTATGTCCAAAGGGGGGATCAAGCTTCAATTATTGGTGGAGCAATTAATTTTGTGAAGGAGCTAGAGCAGCAAGTACAGTTTCTTTCAACAGCTCAAATGGAATCAAAAGGGAATAATAATTCAGAAGGTTGTTGTAGTTCTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACAAACCCCATTCTCTGAGTTTTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTAGTTCTGTGGGAGAAAATGAAACCCAAAGCTCCTCCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGGTCAAAGAAAAGGCCTAAACAGGTCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCAACCATCAACCAAATTGTTCTTTACTGTCTCAGTGTTAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCTCTTATGAACTGA 978 40.49 MALEAVVFSQDPLSYNGSKDLYNLFGGGIWANGSFEYPQIPHDFPENQTENFPFGDWNSSSSVLAPNPSPEAAISRNGLIFNDPNPPLEPESRTPNPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVQFLSTAQMESKGNNNSEGCCSSNSSSSSSSSSSSQTPFSEFFSFPQFKAMEGSSVGENETQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEDSLMN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5164846 5166327 - Tan0008964.1 Tan08g0533 760425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0533 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Tan08g0533 325 Gene3D - 107 191 IPR036638 GO:0046983(InterPro)
Tan08g0533 325 PANTHER MAX DIMERIZATION, MAD 1 317 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan08g0533 325 MobiDBLite consensus disorder prediction 179 203 - -
Tan08g0533 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 177 IPR036638 GO:0046983(InterPro)
Tan08g0533 325 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Tan08g0533 325 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Tan08g0533 325 MobiDBLite consensus disorder prediction 45 117 - -
Tan08g0533 325 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2427 Tan-Chr2:92816404 Tan08g0533 Tan-Chr8:5164846 4.10E-63 dispersed
Tan07g1987 Tan-Chr7:71592602 Tan08g0533 Tan-Chr8:5164846 2.60E-47 dispersed
Tan08g0533 Tan-Chr8:5164846 Tan09g0274 Tan-Chr9:23636714 9.10E-61 dispersed
Tan08g0533 Tan-Chr8:5164846 Tan10g0525 Tan-Chr10:4203530 1.90E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28109 PF00010 HLH 4.50E-10 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0533 - - - 0.0