Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0623 ATGGGGCATTTCTCTACCATGTTCAATGGGTTGGCAAGGTCATTTTCCTTCAAGAAAGGTAGAAATTCCGGGAGTCTAGGTGATGAGGGAGGGCGAGAAGCTGCAAAAGCCATGGTAAAGGATGCGAAAAAGAAAGACTCGATATTATGCACCTCTGGTGTCCTCAATGCAGAAGGTTCAGATAGTTTTGCTTCGGTGTTCTCGAAAAAAGGCGAAAAAGGAGTAAACCAAGACTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGATGGGCATGGACCATGGGGTCATTTTGTAGCAAAAACGGTAAGAGAATCAATGCCGCCATCTTTGCTGTACCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTCGATATATGGAAGCATTCCTATTTAAGAACTTGTGCTGCCATCGATCACGAACTTGAGCAGCATCGGAAAATCGATACAGTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGTGAACTAGTCGTTTTGGCCAACGTTGGCGACTCTCGAGCAGTTTTGGCTACTACTTCAGATGATGGAAGTGTAGTACCGGTTCAGCTCACCGTCGATTTCAAACCAAACCTACCTCAGGAGGCCGAGCGGATAATACAGTGCAATGGGAGAGTGTTTTGTTTAAGTGACGAGCCAGGAGTTCACAGAGTCTGGCTTCCCAACGAGGAATCACCTGGATTGGCGATGTCGAGAGCGTTTGGTGATTATTGTATTAAAGAATTTGGACTCATTTCTGTGCCAGAAGTGACATGTAGAAGCATAACCAGCAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTCTCCAATCAAGAAGCAGTGGAGATTGTATCGTCAACACCGGATAGAGCGAAATCAGCAAAACGTCTGGTCGAGTGTGCGGTTCGGGCATGGAAACAGAAGAGACGGGGCATTGCAATGGATGATATATCAGCTATCTGCCTCTTCTTCCACTCCTCATTAGAACAAGAAGATCAACTTCTATCCATTCCATAG 1104 45.2 MGHFSTMFNGLARSFSFKKGRNSGSLGDEGGREAAKAMVKDAKKKDSILCTSGVLNAEGSDSFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESMPPSLLYHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKEFGLISVPEVTCRSITSRDQFIILATDGVWDVVSNQEAVEIVSSTPDRAKSAKRLVECAVRAWKQKRRGIAMDDISAICLFFHSSLEQEDQLLSIP 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6323195 6327245 + Tan0020002.1 Tan08g0623 760515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0623 367 SMART PP2C_4 52 351 IPR001932 -
Tan08g0623 367 FunFam Probable protein phosphatase 2C 34 54 355 - -
Tan08g0623 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Tan08g0623 367 SUPERFAMILY PP2C-like 62 354 IPR036457 -
Tan08g0623 367 Gene3D - 51 356 IPR036457 -
Tan08g0623 367 CDD PP2Cc 63 353 IPR001932 -
Tan08g0623 367 PANTHER PROTEIN PHOSPHATASE 49 352 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan08g0623 367 Pfam Protein phosphatase 2C 87 330 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2710 Tan-Chr6:79512874 Tan08g0623 Tan-Chr8:6323195 3.20E-120 dispersed
Tan06g2711 Tan-Chr6:79512874 Tan08g0623 Tan-Chr8:6323195 7.70E-122 dispersed
Tan08g0623 Tan-Chr8:6323195 Tan08g0625 Tan-Chr8:6323195 1.90E-216 dispersed
Tan08g0623 Tan-Chr8:6323195 Tan08g0624 Tan-Chr8:6323195 1.90E-216 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0623 - - - 0.0