Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0631 | ATGGTGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACACAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAATGTCCAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCGAAATGGAAATAGATCAAGACTGGAGGACGATGATTTAGAAGACATGGTATTTAATGAGCATCAAATGGCTAAGCTGCGAAAGAGTGAAGCATTCACTGCCGAAAGAGAGAAAGAGATCCAACATGTTGTAGAATCCGTGAATGAACTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTTATAGACCAGGGCACCATTATTGATAGAATAGATTATAATATTCAAAATGTTGCAACGACGGTCGATGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAGAACACAGAAACAAGGAGGGATGGTAATGTGTGCGTCTGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTGATCCTTAAAACCATACTATTTTGA | 693 | 40.55 | MVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNRNGNRSRLEDDDLEDMVFNEHQMAKLRKSEAFTAEREKEIQHVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6385332 | 6390099 | + | Tan0021761.2 | Tan08g0631 | 760523 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0631 | 230 | ProSitePatterns | Syntaxin / epimorphin family signature. | 140 | 179 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Tan08g0631 | 230 | Pfam | SNARE domain | 170 | 222 | IPR000727 | - | |
Tan08g0631 | 230 | Gene3D | - | 1 | 188 | - | - | |
Tan08g0631 | 230 | SUPERFAMILY | t-snare proteins | 3 | 189 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Tan08g0631 | 230 | Coils | Coil | 85 | 105 | - | - | |
Tan08g0631 | 230 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 134 | 196 | IPR000727 | - | |
Tan08g0631 | 230 | FunFam | Syntaxin-43 | 1 | 188 | - | - | |
Tan08g0631 | 230 | CDD | SNARE_syntaxin16 | 138 | 195 | - | - | |
Tan08g0631 | 230 | PANTHER | SYNTAXIN | 15 | 214 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Tan08g0631 | 230 | SMART | tSNARE_6 | 129 | 196 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0631 | Tan-Chr8:6385332 | Tan08g0633 | Tan-Chr8:6385332 | 5.20E-111 | dispersed | |
Tan08g0630 | Tan-Chr8:6385332 | Tan08g0631 | Tan-Chr8:6385332 | 9.20E-116 | tandem | |
Tan08g0631 | Tan-Chr8:6385332 | Tan08g0632 | Tan-Chr8:6385332 | 1.30E-109 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0631 | K08489 | - | csv:101207998 | 416.772 |