Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0631 ATGGTGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACACAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAATGTCCAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCGAAATGGAAATAGATCAAGACTGGAGGACGATGATTTAGAAGACATGGTATTTAATGAGCATCAAATGGCTAAGCTGCGAAAGAGTGAAGCATTCACTGCCGAAAGAGAGAAAGAGATCCAACATGTTGTAGAATCCGTGAATGAACTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTTATAGACCAGGGCACCATTATTGATAGAATAGATTATAATATTCAAAATGTTGCAACGACGGTCGATGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAGAACACAGAAACAAGGAGGGATGGTAATGTGTGCGTCTGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTGATCCTTAAAACCATACTATTTTGA 693 40.55 MVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNRNGNRSRLEDDDLEDMVFNEHQMAKLRKSEAFTAEREKEIQHVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6385332 6390099 + Tan0021761.2 Tan08g0631 760523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0631 230 ProSitePatterns Syntaxin / epimorphin family signature. 140 179 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan08g0631 230 Pfam SNARE domain 170 222 IPR000727 -
Tan08g0631 230 Gene3D - 1 188 - -
Tan08g0631 230 SUPERFAMILY t-snare proteins 3 189 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan08g0631 230 Coils Coil 85 105 - -
Tan08g0631 230 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 134 196 IPR000727 -
Tan08g0631 230 FunFam Syntaxin-43 1 188 - -
Tan08g0631 230 CDD SNARE_syntaxin16 138 195 - -
Tan08g0631 230 PANTHER SYNTAXIN 15 214 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan08g0631 230 SMART tSNARE_6 129 196 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0631 Tan-Chr8:6385332 Tan08g0633 Tan-Chr8:6385332 5.20E-111 dispersed
Tan08g0630 Tan-Chr8:6385332 Tan08g0631 Tan-Chr8:6385332 9.20E-116 tandem
Tan08g0631 Tan-Chr8:6385332 Tan08g0632 Tan-Chr8:6385332 1.30E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0631 K08489 - csv:101207998 416.772