Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0632 ATGGTGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACACAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAATGTCCAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCGAAATGGAAATAGATCAAGACTGGAGGACGATGATTTAGAAGACATGGTATTTAATGAGCATCAAATGGCTAAGCTGCGAAAGAGTGAAGCATTCACTGCCGAAAGAGAGAAAGAGATCCAACATGTTGTAGAATCCGTGAATGAACTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTTATAGACCAGGGCACCATTATTGATAGAATAGATTATAATATTCAAAATGTTGCAACGACGGTCGATGAGGGCCTTAAGCAACTGCAGAAGGTTAGTCCCGACTCCGAGTCACTAATTTCTTTCGGGTTTCAAAGAATTCTCAAAATATACCCCCATAAAAAATGTAGGAGAATCTCTCTGTTTCATTTTTGTGTTTACGTCGTCGTCGTGGTGCAGGCGGAGAGAACACAGAAACAAGGAGGGATGGTAATGTGTGCGTCTGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTGATCCTTAAAACCATACTATTTTGA 819 40.54 MVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNRNGNRSRLEDDDLEDMVFNEHQMAKLRKSEAFTAEREKEIQHVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKVSPDSESLISFGFQRILKIYPHKKCRRISLFHFCVYVVVVVQAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6385332 6390099 + Tan0021761.3 Tan08g0632 760524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0632 272 ProSitePatterns Syntaxin / epimorphin family signature. 140 179 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan08g0632 272 Gene3D - 1 188 - -
Tan08g0632 272 Coils Coil 85 105 - -
Tan08g0632 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 134 196 IPR000727 -
Tan08g0632 272 FunFam Syntaxin-43 1 188 - -
Tan08g0632 272 SUPERFAMILY t-snare proteins 3 189 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan08g0632 272 Pfam SNARE domain 170 196 IPR000727 -
Tan08g0632 272 CDD SNARE_syntaxin16 138 195 - -
Tan08g0632 272 SMART tSNARE_6 129 196 IPR000727 -
Tan08g0632 272 PANTHER SYNTAXIN 15 242 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0632 Tan-Chr8:6385332 Tan08g0634 Tan-Chr8:6385332 3.20E-136 dispersed
Tan08g0631 Tan-Chr8:6385332 Tan08g0632 Tan-Chr8:6385332 1.30E-109 tandem
Tan08g0632 Tan-Chr8:6385332 Tan08g0633 Tan-Chr8:6385332 5.10E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0632 K08489 - csv:101207998 396.356