Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0645 | ATGGCTAATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGCTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTATGAGGTAGACCTCGAGTCCCGATTGGGGAAAACCCAGGTTGTCACTCCAGTAGCGCCTCTAAGTCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTAGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCGTCTCTTGAACAGGTACAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCTGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGGGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCCGAAGAGGAACCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTCCGTTCATCCAAGAAGTGA | 609 | 45.98 | MANTSNTAAGVDNTFRRKFDREEYLERAREREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDIAAMMGFGGFRSSKK | 202 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6464026 | 6467181 | + | Tan0007337.2 | Tan08g0645 | 760537 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0645 | 202 | Coils | Coil | 144 | 181 | - | - | |
Tan08g0645 | 202 | Coils | Coil | 22 | 42 | - | - | |
Tan08g0645 | 202 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 8 | 202 | IPR040107 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0005681(InterPro)|GO:0046540(PANTHER) | |
Tan08g0645 | 202 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Tan08g0645 | 202 | MobiDBLite | consensus disorder prediction | 137 | 202 | - | - | |
Tan08g0645 | 202 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | IPR013087 | - | |
Tan08g0645 | 202 | Gene3D | Classic Zinc Finger | 78 | 116 | - | - | |
Tan08g0645 | 202 | MobiDBLite | consensus disorder prediction | 137 | 183 | - | - | |
Tan08g0645 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 125 | IPR036236 | - | |
Tan08g0645 | 202 | FunFam | zinc finger matrin-type protein 2-like | 78 | 116 | - | - | |
Tan08g0645 | 202 | Coils | Coil | 116 | 136 | - | - | |
Tan08g0645 | 202 | MobiDBLite | consensus disorder prediction | 26 | 51 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0644 | Tan-Chr8:6464026 | Tan08g0645 | Tan-Chr8:6464026 | 4.80E-92 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28114 | PF12171 | zf-C2H2_jaz | 1.80E-06 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0645 | K12848 | - | csv:101206387 | 327.405 |