Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0664 ATGGAAGGCCCTCTGTTGCAAAAAGTGTGCGCCCTGTACGACCAAATCTCGAGCCTCACCAGCCTCAAGCCTTCCAAAAATGTCGACACTCTTTTCACCCAACTCGTTCTCACGTGCTCCCCGCCCGCCCCCGATCTCGATATCGCCTCCTTGCCCGAGCCACTTCGAGCCATGAGGGCTCATCTCATCCGCCTCTGTGCCAACGCTGAGACGCTGCTTGAACTTCATTTCTCGACCATTTTGGCCTCCTTTGATAACCCCATCCATAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCGCTTCTTGAGTTTGATATTTTGAGTTCTCATTGCCGTCGCGTCCCGACTAGTGTTGCGTTCGTTGGTTCTGGCCCGCTCCCGCTCTCCTCCATTGTCATGGCGTCGACACATCTTAAGGGTACGGTTTTTCACAACTTTGACATTGATTCGAATGCAAACTCCATGGCGGGTCGGTTGGTTCGCTCTGACCCGGACTTATCGCGACGAATGATGTTTCACACAATCGATGTAATGGATGTGACTGAAGGGTTGGGGGAGTACGAGGTGGTGTTTTTAGCAGCATTGGTAGGGTTGGAGGAGGAAGATAAGGCAAAGGTTTTGAGGCATTTGGGGAAGCATATGGCGACCGGAGCTTATTTGATGCTTAGGAGTGCACATGGAGCTAGGGCATTCTTGTATCCTGTTGTTGATGTGTGTGATGTTGAAGCTTCTGGATTTGAGATTCTATCTGTGTTTCATCCCACTGATGAAGTTATAAACTCTATTGTTATTGCGAGAAAGGTATTTGATCTCGTCCCAGAAGTCGAAGGAAATTTTGCCGATGATGACGAAAACGATGACAAAGATGATGAAGATGAAAATGACGACAAACGAGGTGTTTTAGTTAACACCTCTATTGTATTGGCTGAAAAATGCTCTGGGTTTAAAGGATTTGGTCCCATGATTGAGGAGCTTGCCATGGAAGAGCAACCTTCTTGA 1011 47.58 MEGPLLQKVCALYDQISSLTSLKPSKNVDTLFTQLVLTCSPPAPDLDIASLPEPLRAMRAHLIRLCANAETLLELHFSTILASFDNPIHNLSIFPYYSNYLKLSLLEFDILSSHCRRVPTSVAFVGSGPLPLSSIVMASTHLKGTVFHNFDIDSNANSMAGRLVRSDPDLSRRMMFHTIDVMDVTEGLGEYEVVFLAALVGLEEEDKAKVLRHLGKHMATGAYLMLRSAHGARAFLYPVVDVCDVEASGFEILSVFHPTDEVINSIVIARKVFDLVPEVEGNFADDDENDDKDDEDENDDKRGVLVNTSIVLAEKCSGFKGFGPMIEELAMEEQPS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6608724 6609990 + Tan0020561.1 Tan08g0664 760556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0664 336 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
Tan08g0664 336 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Tan08g0664 336 PANTHER NICOTIANAMINE SYNTHASE 3 5 280 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Tan08g0664 336 MobiDBLite consensus disorder prediction 282 297 - -
Tan08g0664 336 MobiDBLite consensus disorder prediction 282 302 - -
Tan08g0664 336 Pfam Nicotianamine synthase protein 5 272 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0664 K05953 - - csv:101203651 467.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0664 Tan-Chr8:6608724 Tan09g0075 Tan-Chr9:3447708 6.70E-99 dispersed
Tan08g0663 Tan-Chr8:6591165 Tan08g0664 Tan-Chr8:6608724 1.40E-86 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0664 . 5 271 Nicotianamine Synthase Gene Family AT1G09240 61.3 3.1e-93 339.3
Tan09g0075 . 1 273 Nicotianamine Synthase Gene Family AT1G09240 60.0 2.0e-92 336.7
Tan08g0663 . 1 280 Nicotianamine Synthase Gene Family AT1G09240 60.9 6.6e-88 321.6
Tan09g1670 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 53.3 2.4e-74 276.6
Tan09g0076 . 1 229 Nicotianamine Synthase Gene Family AT1G09240 58.0 5.6e-71 265.4
Tan09g0075 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 62.6 1.2e-97 354.0
Tan08g0664 . 5 318 Nicotianamine Synthase Gene Family AT1G56430 56.0 1.6e-97 353.6
Tan08g0663 . 3 280 Nicotianamine Synthase Gene Family AT1G56430 60.6 1.8e-88 323.6
Tan09g1670 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 52.6 3.5e-76 282.7
Tan09g0076 . 3 229 Nicotianamine Synthase Gene Family AT1G56430 59.4 2.2e-75 280.0
Tan08g0664 . 5 272 Nicotianamine Synthase Gene Family AT5G04950 61.3 1.1e-93 340.9
Tan09g0075 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.8 4.6e-89 325.5
Tan08g0663 . 1 280 Nicotianamine Synthase Gene Family AT5G04950 57.2 1.3e-88 323.9
Tan09g1670 . 15 281 Nicotianamine Synthase Gene Family AT5G04950 51.3 2.1e-73 273.5
Tan09g0076 . 1 229 Nicotianamine Synthase Gene Family AT5G04950 55.2 2.1e-70 263.5
Tan08g0664 . 5 272 Nicotianamine Synthase Gene Family AT5G56080 60.7 4.0e-93 339.0
Tan09g0075 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 57.8 3.2e-90 329.3
Tan08g0663 . 1 280 Nicotianamine Synthase Gene Family AT5G56080 57.8 5.1e-88 322.0
Tan09g0076 . 1 229 Nicotianamine Synthase Gene Family AT5G56080 55.4 6.9e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125