Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0667 | ATGGAAGAGTTTTACAGGCTCAACAACTCTGTGATATCCTCATACAGTAATGGAGTTGTTGTTGGTGAAGAAGCCATTGCAAGCACTAGCTGTGGTGGGATCCATGGATCAGCTCTAATGGTGGATGATGAAATGCTTCAGCTTGAAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAAATTGTCAACCATCCTCTTTATCCCAAACTGCTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCATCCTCCTAGGTCTTGTGTTGAGCTGGGAGCTGATCCTCAACTGGACAACTTCATGGAGTCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTTTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACAGCGACGTCGGATTCTCATTCTGCTATGAATGATGAAGCAGCGAGAACTCCAGACGAAGAACCGAGCAGCTATGGCGAGGTCGAAATGCCGGGAAACCACGAGACATTCTGCACGCGGCAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAGAAGGAATTCTTGAAAAAAAGGAAGAAAGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTATTTGACTGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGGAAAAATCAAAACTTTCTGATATCACTGGTTTGGATCAAAAGCAGATCAACAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCCGAAGATATGCGGTTTGCGCTCATGGACGGGGCCGAGGTCGGGATCGGGGTCGGGGAATGCATCAAAGGATCAAATTTTTATGACAATGGAGAAACAGGAGGCCATGTAATTTGA | 984 | 44.31 | MEEFYRLNNSVISSYSNGVVVGEEAIASTSCGGIHGSALMVDDEMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLLSAYIECQKVGAPPQVACLLEEIGRENHPPRSCVELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSHSAMNDEAARTPDEEPSSYGEVEMPGNHETFCTRQTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSDITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGAEVGIGVGECIKGSNFYDNGETGGHVI | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6634357 | 6637419 | - | Tan0006683.1 | Tan08g0667 | 760559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0667 | 327 | ProSitePatterns | 'Homeobox' domain signature. | 264 | 287 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan08g0667 | 327 | Pfam | KNOX1 domain | 62 | 103 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan08g0667 | 327 | Pfam | Homeobox KN domain | 246 | 285 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Tan08g0667 | 327 | SMART | HOX_1 | 228 | 293 | IPR001356 | GO:0003677(InterPro) | |
Tan08g0667 | 327 | Pfam | ELK domain | 206 | 227 | IPR005539 | GO:0003677(InterPro) | |
Tan08g0667 | 327 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 59 | 299 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan08g0667 | 327 | Gene3D | - | 224 | 296 | - | - | |
Tan08g0667 | 327 | SMART | KNOX1_2 | 60 | 104 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan08g0667 | 327 | Pfam | KNOX2 domain | 111 | 157 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan08g0667 | 327 | ProSiteProfiles | 'Homeobox' domain profile. | 226 | 289 | IPR001356 | GO:0003677(InterPro) | |
Tan08g0667 | 327 | MobiDBLite | consensus disorder prediction | 165 | 188 | - | - | |
Tan08g0667 | 327 | SUPERFAMILY | Homeodomain-like | 228 | 297 | IPR009057 | - | |
Tan08g0667 | 327 | ProSiteProfiles | ELK domain profile. | 206 | 226 | IPR005539 | GO:0003677(InterPro) | |
Tan08g0667 | 327 | SMART | ELK_2 | 206 | 227 | IPR005539 | GO:0003677(InterPro) | |
Tan08g0667 | 327 | SMART | KNOX2_2 | 107 | 158 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan08g0667 | 327 | CDD | homeodomain | 238 | 289 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0667 | Tan-Chr8:6634357 | Tan09g2258 | Tan-Chr9:72654040 | 6.20E-65 | dispersed | |
Tan08g0667 | Tan-Chr8:6634357 | Tan04g1268 | Tan-Chr4:12193149 | 6.10E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28118 | PF03791 | KNOX2 | 3.80E-21 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0667 | - | - | - | 0.0 |