Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0667 ATGGAAGAGTTTTACAGGCTCAACAACTCTGTGATATCCTCATACAGTAATGGAGTTGTTGTTGGTGAAGAAGCCATTGCAAGCACTAGCTGTGGTGGGATCCATGGATCAGCTCTAATGGTGGATGATGAAATGCTTCAGCTTGAAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAAATTGTCAACCATCCTCTTTATCCCAAACTGCTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCATCCTCCTAGGTCTTGTGTTGAGCTGGGAGCTGATCCTCAACTGGACAACTTCATGGAGTCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTTTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACAGCGACGTCGGATTCTCATTCTGCTATGAATGATGAAGCAGCGAGAACTCCAGACGAAGAACCGAGCAGCTATGGCGAGGTCGAAATGCCGGGAAACCACGAGACATTCTGCACGCGGCAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAGAAGGAATTCTTGAAAAAAAGGAAGAAAGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTATTTGACTGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGGAAAAATCAAAACTTTCTGATATCACTGGTTTGGATCAAAAGCAGATCAACAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCCGAAGATATGCGGTTTGCGCTCATGGACGGGGCCGAGGTCGGGATCGGGGTCGGGGAATGCATCAAAGGATCAAATTTTTATGACAATGGAGAAACAGGAGGCCATGTAATTTGA 984 44.31 MEEFYRLNNSVISSYSNGVVVGEEAIASTSCGGIHGSALMVDDEMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLLSAYIECQKVGAPPQVACLLEEIGRENHPPRSCVELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSHSAMNDEAARTPDEEPSSYGEVEMPGNHETFCTRQTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSDITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGAEVGIGVGECIKGSNFYDNGETGGHVI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6634357 6637419 - Tan0006683.1 Tan08g0667 760559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0667 327 ProSitePatterns 'Homeobox' domain signature. 264 287 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan08g0667 327 Pfam KNOX1 domain 62 103 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan08g0667 327 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan08g0667 327 SMART HOX_1 228 293 IPR001356 GO:0003677(InterPro)
Tan08g0667 327 Pfam ELK domain 206 227 IPR005539 GO:0003677(InterPro)
Tan08g0667 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 299 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan08g0667 327 Gene3D - 224 296 - -
Tan08g0667 327 SMART KNOX1_2 60 104 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan08g0667 327 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan08g0667 327 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677(InterPro)
Tan08g0667 327 MobiDBLite consensus disorder prediction 165 188 - -
Tan08g0667 327 SUPERFAMILY Homeodomain-like 228 297 IPR009057 -
Tan08g0667 327 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677(InterPro)
Tan08g0667 327 SMART ELK_2 206 227 IPR005539 GO:0003677(InterPro)
Tan08g0667 327 SMART KNOX2_2 107 158 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan08g0667 327 CDD homeodomain 238 289 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0667 Tan-Chr8:6634357 Tan09g2258 Tan-Chr9:72654040 6.20E-65 dispersed
Tan08g0667 Tan-Chr8:6634357 Tan04g1268 Tan-Chr4:12193149 6.10E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28118 PF03791 KNOX2 3.80E-21 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0667 - - - 0.0