Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0725 ATGTTTGATTGTGGTCACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTCGTGAGGTTGGATGACTTGGACTCTAGGTTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTGCAGTCCATGGAAATGATAAGCCATCTGGATCTTTTAAGAGAGGAATGAGAAAAGGGTCCGAAGGACTTAAGTCAATTGGTCGATCACTTAAGTTTGGGGTTTCTCGAGCTGTATTTCCGGAGGATCTCAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTTAATAAGCTTTTTGTCATATCATGTTTTTTGGCAATATCTGTGGACCCATTATTCTTTTATGTTCCTGTCATTAACCAAACCTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAGTTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTCATTGATCCTGCAAAAATAGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTACCATTGACTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTATTAGCTGTGGAACGCAATGATTCATGTTGGCAGAAGTATTGTAGTGCCCCGATTTGCAGGAAGGATTTCTTATATTGTGGTAACCAAGACATGCAAGGTTATGCAGCTTGGAACCAGACAGGTGTGGGTGACCTTAAGTCAAGATGCAAACCTGCTGATGATAATGATCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGCATTGCTGCATCCAAGAATTTTATCGCCAAATATTGTTACTGTCTATGGTGGGGGCTACAAAACTTAAGTACACTTGGGCAGGGTCTTCAAACAAGCACGTATCCGTATGAAGTGATCTTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCGGAGCAGTGGATGCATCACCGCTTACTGCCACAGGAACTTCGGGAGAGAGTCAGACGTTATGATCAGTATAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCAAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCCTGTTTGTTTACGGAGTACACATACATAGTTCGTGAAGGTGATCCAGTGGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACGGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTCTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCGAAATCTGGTTCGAATCTTCCATCTTCTACAAGAACAGTAAAGGCTATTACGGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGGCAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGACATGGGCTGCTTGCTTCATTCAAGCGGCATGGCGTCGGTATTCCAAGAGAAAGACTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCAAACTGCCACGAGCGGAGGCTCTTATAGTATTCGGGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGCGTTCAGCGATATCGCAACGCAAAGAGTGCTCAGGAGTTGATAAAATTGCAGAAGCCTCCGGAGCCAGATTTTAGTGCCGATGATGCTGATTGA 2205 43.49 MFDCGHKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFFNKLFVISCFLAISVDPLFFYVPVINQTSNCLGIDRKLAITVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRALPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDSCWQKYCSAPICRKDFLYCGNQDMQGYAAWNQTGVGDLKSRCKPADDNDQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPYEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRQKEEVAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7495317 7518208 - Tan0013043.1 Tan08g0725 760617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0725 734 Pfam Ion transport protein 108 431 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g0725 734 Gene3D Jelly Rolls 503 623 IPR014710 -
Tan08g0725 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Tan08g0725 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 722 - -
Tan08g0725 734 Gene3D Helix hairpin bin 433 496 - -
Tan08g0725 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Tan08g0725 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan08g0725 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan08g0725 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan08g0725 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan08g0725 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan08g0725 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan08g0725 734 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Tan08g0725 734 SMART cnmp_10 505 636 IPR000595 -
Tan08g0725 734 Pfam Cyclic nucleotide-binding domain 530 615 IPR000595 -
Tan08g0725 734 CDD CAP_ED 505 636 IPR000595 -
Tan08g0725 734 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Tan08g0725 734 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Tan08g0725 734 Gene3D - 109 430 - -
Tan08g0725 734 ProSiteProfiles IQ motif profile. 641 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3372 Tan-Chr5:85471202 Tan08g0725 Tan-Chr8:7495317 4.60E-111 dispersed
Tan07g0460 Tan-Chr7:8450611 Tan08g0725 Tan-Chr8:7495317 4.60E-206 dispersed
Tan07g0461 Tan-Chr7:8450611 Tan08g0725 Tan-Chr8:7495317 5.60E-161 dispersed
Tan07g1291 Tan-Chr7:59875683 Tan08g0725 Tan-Chr8:7495317 1.80E-306 dispersed
Tan07g1336 Tan-Chr7:62795370 Tan08g0725 Tan-Chr8:7495317 1.10E-194 dispersed
Tan08g0725 Tan-Chr8:7495317 Tan08g0727 Tan-Chr8:7495317 0.00E+00 dispersed
Tan08g0725 Tan-Chr8:7495317 Tan08g0726 Tan-Chr8:7495317 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0725 K05391 - csv:101219180 1367.44