Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan08g0796 | ATGGCTTTTCTAGAGGTAAAACAGAAACTCCTACACGAGATTGAAGCTTTAGGATTCTCAAGGGCACAAGCAGCCCGAGCACTTCATAGTACCGGAAATGTCAGCTCTGAAGATGCAATAAATTGGATCGTTGATCATGAGAATGATCCAGATATAGATCAAATGCCCCCGGTAGCAGTAGAGATTGATATTGAATCTCCTGAACCATTCCATATCACAGAGGAAATGAAAATGAAAGCTAATGAACTAAGGGATCAAATTCTGAAACAAAAGGAAAAAGAAGAAAAAGAGTTAGAAAGACAAAGGGAGAAGGATAGAATTCGTTCTGGTAAAGAACTGCAAGAAGCAAAAAGAATGGCCGAAGAAACTGAAAGGAAACGTTATATAGATTCTAGGCAAGTTGAGAAACAGGAGGAGAAAAAAGCAAGAGAAAAAGTTCTACAAAAACTTGAACAAGATAAGATGGAAAGAAAGAAGAATCTTGTAATGCCCTCTCAAAGGTCTGGAAGCCTTGCTACAAAAGCTATCACAATAGAAGCAGGGGAAAAGGACGGACTTAGAGCACTGAATTCAGCAACTTCAGTTAGTAAAACAGTCTCCATGAGAGAATGCTTAAGGTCTCTTAGGCACCATCAAAAGGATGAATCTGACAAAGTGAGAAATGCCTTCCAAACCCTCTCCACCTATGTTAGAAATGTAGCAAGAAATCCTGATGAGGAAAGGTTTAGGAAGATTCCACTCAGTAATCCTTTGTTCCAGGAAAGAGTTGGGAGTTCGAAAGGAGGGATTGAGTTTCTTGAGCTTTGTGGCTTTCGGAGAGAAGGAGACTTTCTATACCTTCCACGTGATAAAGTCGACCGGGAACTTTTAGTCACTGCTGGATCACTTCTGGAATCTGCATTGACAAATCCCTTTTTTGGTATTCTATAA | 930 | 39.89 | MAFLEVKQKLLHEIEALGFSRAQAARALHSTGNVSSEDAINWIVDHENDPDIDQMPPVAVEIDIESPEPFHITEEMKMKANELRDQILKQKEKEEKELERQREKDRIRSGKELQEAKRMAEETERKRYIDSRQVEKQEEKKAREKVLQKLEQDKMERKKNLVMPSQRSGSLATKAITIEAGEKDGLRALNSATSVSKTVSMRECLRSLRHHQKDESDKVRNAFQTLSTYVRNVARNPDEERFRKIPLSNPLFQERVGSSKGGIEFLELCGFRREGDFLYLPRDKVDRELLVTAGSLLESALTNPFFGIL | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8952864 | 8958654 | + | Tan0018775.1 | Tan08g0796 | 760688 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan08g0796 | 309 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Tan08g0796 | 309 | Gene3D | - | 8 | 53 | - | - | |
| Tan08g0796 | 309 | Pfam | PUB domain | 217 | 289 | IPR018997 | - | |
| Tan08g0796 | 309 | Gene3D | - | 203 | 298 | - | - | |
| Tan08g0796 | 309 | PANTHER | F13M7.16 PROTEIN | 1 | 309 | - | - | |
| Tan08g0796 | 309 | SUPERFAMILY | PUG domain-like | 202 | 305 | IPR036339 | - | |
| Tan08g0796 | 309 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
| Tan08g0796 | 309 | Pfam | UBA-like domain | 8 | 54 | IPR015940 | - | |
| Tan08g0796 | 309 | SUPERFAMILY | UBA-like | 5 | 57 | IPR009060 | GO:0005515(InterPro) | |
| Tan08g0796 | 309 | Coils | Coil | 73 | 126 | - | - | |
| Tan08g0796 | 309 | MobiDBLite | consensus disorder prediction | 94 | 126 | - | - | |
| Tan08g0796 | 309 | SMART | PGNneu | 221 | 282 | - | - | |
| Tan08g0796 | 309 | Coils | Coil | 133 | 156 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan06g2294 | Tan-Chr6:74063945 | Tan08g0796 | Tan-Chr8:8952864 | 7.00E-58 | dispersed | |
| Tan08g0796 | Tan-Chr8:8952864 | Tan11g1763 | Tan-Chr11:18310174 | 1.20E-06 | dispersed | |
| Tan08g0796 | Tan-Chr8:8952864 | Tan08g0797 | Tan-Chr8:8953899 | 1.60E-115 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan08g0796 | - | - | - | 0.0 |