Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0848 ATGGCTGCTGATTCTTCCTTTGATGAGAAAAGAGAACTTGTTTATGAAATTTCAAAGACACATGGTGCATGTGAGACACTGCAATCATGGAGCCGTCAAGACATTCTACAAGTCTTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACTGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCATATCCGAAAAGAAGTCATCAGTGTCTGAGGTTTTGAAAAACCTTGAGCCACAGTCTCCTGCAGCTGGCCATAAAACTACCAAAAGGCAGAGGAAATCTGATCAGCCAGTTCAGGTTTCTGTTCCTACAAGTGACTTTCCAACCAGTAGTACGCATAATGATTCTGGTCATACAGCATGCTGCAAAAACTTGGCTTGTCGAGCGACTTTAAATCCAGAAGATGCATTTTGTAGAAGGTGTTCTTGCTGCATCTGTCGTCAGTATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGCGCGGAGCCTCCATTTCTAGGTGATTCGTGTAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGTAAGATCTGGAATTTCGAAAGCTGGACAAAGCAGGGGAATTGATGGTAGCTTCTATTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACAAGAAGAGTCGACATACTTTGTTACCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTCGATGACGCAGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCCGGTGTACCAGTAAAGATGGGTAGAGGTATTGTGAACAGGCTTTCATCGGGTCCCGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCAATGCACTCCAGCAAATCCTTGCATCTTCCGCCTAATCCTGACATACAAGATGCAAATTTTGTTCCTGAAAATATGGTTAGAGTCGAAGATGTTCGGTTGACGTCCCTCACTCTGGTTTTGAGTTGTGAATGTGGGTCTTCTGAGAACCAGGTTGGCTTCACCATATGGCATCGTAAGGCAGATGATGCAGATTATCCGATCGAGCCGACATGTATTCTACGACAACCGAAGACAAGGTTTGTTGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTCTCTTTGAGGGGACGAGAGAGTTGAGGAAGTTTGAAGTTCAGTTCTCAACAATTACGGAGGTGGAAGAGAATCCAGGCTGCTTAGAAATTGAGAGAAGCCAAAGCCACGCAACCAACTGCAGTGACCTTTCTAATCCTTCCTCGGTTGAAGACGAAACTACCGACATTCTTCCCTATGGCGATCGAACTGATAATCTAGGAAAAAACTCCACTGCCTATTCGAAGGGCACCGAAATGCTTTTCTCTGCTAATTTATCTACCGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTACAGGTACGGTTGCTGTGCTGGATAAGGCAAATGCTGAAGGAATAGTTGGTTTGATTCCCAACTCTGTTGGATCAAAGCTCGAGAACAAGCACGGACCACCTGCCCCAAAACTCAACACCGATACTCCGTTAAGCGCCCTTGTTCGGTCTGGAATGCAGTGTGAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGAAGGGCTGAGAGACTGACATCCAGCTGCATGGGCCTTGACAACAGGACTCGAAAAGGAGGGGAACCCCAAGATGGTGGCACATCGAAGATGCGAACTGGGGAAAGGCAGGACGACAAATGTGCAGAAAATGGTGTTTCAGATCGGGATTTCGAGCACTATGTGAAGGTAATTAGATGGTTAGAGTGCGAGGGACATATCGAAAAGAACTTCAGGCAGAAGTTTCTCACTTGGTATAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTTGATACTTTTTCTGAAAGCATTTCGAGCAAAAAACCGACGACTACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2160 44.35 MAADSSFDEKRELVYEISKTHGACETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKSSVSEVLKNLEPQSPAAGHKTTKRQRKSDQPVQVSVPTSDFPTSSTHNDSGHTACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFLGDSCNMSCHLECALKDVRSGISKAGQSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDDAVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMHSSKSLHLPPNPDIQDANFVPENMVRVEDVRLTSLTLVLSCECGSSENQVGFTIWHRKADDADYPIEPTCILRQPKTRFVVMGLSPATEYHFKIVLFEGTRELRKFEVQFSTITEVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLFSANLSTDAFNLSDNGEEGTPTGTVAVLDKANAEGIVGLIPNSVGSKLENKHGPPAPKLNTDTPLSALVRSGMQCEPFVGCSEDGLPITPCKLEVLKDSLGRAERLTSSCMGLDNRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSESISSKKPTTTPPGFCMKLWH 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10557814 10562235 + Tan0007632.1 Tan08g0848 760740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0848 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 5 719 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
Tan08g0848 719 MobiDBLite consensus disorder prediction 97 118 - -
Tan08g0848 719 MobiDBLite consensus disorder prediction 77 118 - -
Tan08g0848 719 CDD FN3 330 404 IPR003961 GO:0005515(InterPro)
Tan08g0848 719 Pfam PHD - plant homeodomain finger protein 125 245 IPR032881 -
Tan08g0848 719 SUPERFAMILY Fibronectin type III 334 405 IPR036116 GO:0005515(InterPro)
Tan08g0848 719 MobiDBLite consensus disorder prediction 602 625 - -
Tan08g0848 719 MobiDBLite consensus disorder prediction 596 625 - -
Tan08g0848 719 ProSiteProfiles Fibronectin type-III domain profile. 329 428 IPR003961 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0848 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0848 Tan-Chr8:10557814 Tan09g1695 Tan-Chr9:68552650 2.90E-240 dispersed
Tan08g0848 Tan-Chr8:10557814 Tan09g1694 Tan-Chr9:68552650 2.90E-240 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0848 . 4 456 PHD Gene Family AT4G30200 53.8 1.8e-126 450.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64