Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0898 ATGGAGAATATTCTCGACGAGTATCGGTACTACTGGGAAACCAACATGTTTCTGCAGACGGAAGAGTTCGACAGTTGGGGACTGGACGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCGGACGGAACGCCGTCGTCTTTAGAGGCGTCGAAGAATATCTTATCGGAGAGGAATCGGAGAAAGAAGCTTAACGATAGGCTTCTCGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCAATAATCAAAGATGCAATTGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGGATCGAAATAGAGATCTCAGATTTGGAATCAGGCAAAATAAGCAACGGATCAACAATAACAAATCAATCGATCAACGAAAATGGCGATCAAATCTCGAGGAAGAGGAGAACGAATCGAAAAACAGGCGATGCGCCGACGTCTTTTCCGATCGAAGTTCTCGATTTGAGTGTGAACTACATGGGAGAGAAGACGATCGTGGTGAGTTTGACGTGCGGACGAAGAGACGACACGATATTGAAGATTTGTCAAGTGATTGAATCGTTGAAGCTGAAAATCATAACTGCGAACATCACCGTCGTTGCAAACAGGCTCTTGAACACGCTCTTCGTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTAAAGGTAAAAATAGAAACAGCAATAGCAGCAATAATGAGTGATCCAGAAAACCGTATGAGCATTTGA 735 45.03 MENILDEYRYYWETNMFLQTEEFDSWGLDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIEIEISDLESGKISNGSTITNQSINENGDQISRKRRTNRKTGDAPTSFPIEVLDLSVNYMGEKTIVVSLTCGRRDDTILKICQVIESLKLKIITANITVVANRLLNTLFVEAERAEEEELKVKIETAIAAIMSDPENRMSI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11974965 11985198 + Tan0010336.1 Tan08g0898 760790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0898 244 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Tan08g0898 244 MobiDBLite consensus disorder prediction 119 146 - -
Tan08g0898 244 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 117 - -
Tan08g0898 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Tan08g0898 244 Coils Coil 213 233 - -
Tan08g0898 244 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Tan08g0898 244 Coils Coil 87 114 - -
Tan08g0898 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 112 IPR036638 GO:0046983(InterPro)
Tan08g0898 244 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Tan08g0898 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 224 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0199 Tan-Chr5:1560256 Tan08g0898 Tan-Chr8:11974965 6.90E-18 dispersed
Tan08g0898 Tan-Chr8:11974965 Tan10g0111 Tan-Chr10:1311704 6.50E-11 dispersed
Tan08g0898 Tan-Chr8:11974965 Tan09g1736 Tan-Chr9:68878886 4.30E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28129 PF00010 HLH 7.40E-11 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0898 - - - 0.0