Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0946 ATGTTGAAGTCTAATAGAGTGTTCTTACAGAGGAGGAATTGGAAGATGGCGTCAAGCTCCTCGAATTCGCCTTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAACCGGAGTGCGTATTCGCGCCGTATTTTCCGCCGGACCAGCCGCAGAAATTCGCCAATGTTCATAAGGTATTTGGCGCTAGCAATGTCACGAAACTTCTCAATGAATTGCATCCACACCAGAGAGAAGATGCCGTCAATTCGCTTGCGTACGAAGCCGATATGCGCCTTCGTGACCCTGTTTATGGCTGCGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACATGCGCCAAATCCGAGCTCTCCAAATATCAAAACCTAGGCATCGGGAACCACGCCGCCCTGATTTCGCCGCCTTCCGCCGTTGCCGCCGTATCCACCGCCTCTCATGGACAGCGCAACCACCAGGCGGCCTTCAATTTTGCTAGAGATCAACCGCATGGCCTCCTCTATCACGATCAATTTTTCCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGGAGCTTCGACGGCGGTAGCAACTACGACGCTGGACTTTTAGCCGTCAACGTCACCGCCAGCATCGGTAATCTCAGCCACCAGTTCCAGCAACCGCGCGCCGCCGCCGGAGACGATCGCCGCGGTACTCTCGATCATTCTTAG 717 53.42 MLKSNRVFLQRRNWKMASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSAVAAVSTASHGQRNHQAAFNFARDQPHGLLYHDQFFPRDQQQQQMMLRRSFDGGSNYDAGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13911607 13913866 + Tan0000076.1 Tan08g0946 760838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0946 238 Pfam Lateral organ boundaries (LOB) domain 24 121 IPR004883 -
Tan08g0946 238 ProSiteProfiles LOB domain profile. 23 124 IPR004883 -
Tan08g0946 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 22 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0165 Tan-Chr6:1515328 Tan08g0946 Tan-Chr8:13911607 3.00E-23 dispersed
Tan07g1017 Tan-Chr7:25342397 Tan08g0946 Tan-Chr8:13911607 5.20E-48 dispersed
Tan08g0946 Tan-Chr8:13911607 Tan09g2289 Tan-Chr9:72856130 4.70E-46 dispersed
Tan08g0946 Tan-Chr8:13911607 Tan07g1392 Tan-Chr7:64748048 2.50E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28133 PF03195 LOB 5.10E-43 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0946 - - - 0.0