Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1010 ATGGGGACAGAGCTTATCAGAGTTTGTGTTGAAGAAGATAGTGAGGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCCTTCCCTCTAGGGAAGGTGCGCAATGATGAGAAACGAGATGGTAATGTCCCCGTTAGTTTGCCAACAACTGTCTCTGAGCCACAACCAGTTAAAGTGGAAACTGACGTAGAAGTTACTGATGTTGCAAAAGTATCAAGGTCTCTCCGGCGGAAACCATGTATAAACTATAGACAATATGATTTCTGCTCTGACGATGAGCTTGATACTAAGCGTCTGGATCTGAATTTTTCTTCAAGGCCTCCTCTTTTGAGGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTCCAAAACCGAGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGAAGGAAAAGGAGGAGGGTTTATCGAAAGGGGGTTGATGTTACGACCTTAAATGGAAAAAATGGAGATGCTGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGAATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAATATTTTAGTAAACCACTAAATGATACTGCAAAGGGTTGTAATCCATCCATGCCACAAGAGAACGAACATTGGAAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAAGTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAGAGTTGCTGTCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATCTCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCATCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTAAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGCGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTCTTTGAAGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGAGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTACTGCTTGGTGCTGCAAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAAGATACTTTGGATAACTTACGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGTTGGAGTGTGCATGGAGGAACTTTCCTTGTAGTTCTTCTCAGGCAATTAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGTTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACGCCAATGAACTGAACATACTTCTTGAAGCATTGCAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCCCTCAGTTCATCCAGGGAGTTGAATTCTCAATCATCAGCCAAATCCTGTGGGAATCCTAGATTGAAAGAACTCTTGAGGCAATCTTCATTACTGCCAACTCTAACTGCTATTGACAGCCCTTCTCATCATGCCAAAAAGGTATCTGAAGTTACTGCTTCTTTTCTAGAAAATAAGAAGGTAATTTCCACACTTAATGGATCTGGGAAGGACGTTCAGCAGCAAAATCATAAATCTGAGGTGAAAAGAGAAAATGATGAACTAAACCACGAACTCGTGGCAACCAATTCAAGGCATGCAGGTTCACAGTGCTCTAAGGAGGATACAAATGCTCTGAATTTGGTAGAAGTGAAAAAGAGAATGCATAAAACGTGTCCTGAAAATATCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGATGATTTCAAATGGTTTAGCTGAAAGTTCATTAGTAAAACAGCTGGAAACTTCAGATCGGATCACTGATGTCGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGCACCCCGGTGACTGATGCAACGACCATGGGAGAAAAGGAAGACAGAAAATTGAATAATTGCCAATCAAGCATTGAACCTTTAAATAATAAACAGTCTCAAAACGTTAACTTATCAGTTAGAAATGCAGCTAATGCTGTTCAGAAAAACAAATTTTCAGAAGCAGGATTAGGTCATAGTAATAAAGTATCTCCAGCTTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAGCCGAATGAGGGTAAGCCTGGAAATGTGGGAACAGGTGTTACCTCTTGTTTGTTAGACACTAATAGAACTACTGGAAATTTATCCTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATTGTGATCTCAGGGAAGTTTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTATATAAGTGTTTTAGATCCATCAACGTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGGTTGTTTTGGAGCATTGCCCTAGTGAAGTATTCGTTCATGTTTCTGCTGCCAGATGTTGGGAGTTGGTTAGAGACCGAGTCAATCAGGAAATTGCGAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTTTACAGCCTCCTGGGAGTTTAGATGGGTTAGAGATGTTCGGCTTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGCGGTGAGTATTGGGACTCTCGGCCCTATTCTCGCCCTCATGTACAGAGTCCACAACTGTCCCAGTCAACAGAAATTAGTCGAAACATGCAAACAACCGAAAGGAACCACGGGGCCGATCCTCGGCCTGCTGGAGTTGATATAGTACTTAGGGAATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCGAGATGTGCTGACTCGACTTCTTAAAGAAGAGATTCAAAGTCATCGAAGATGA 3708 41.96 MGTELIRVCVEEDSEDFPSVPPGFESYISFPLGKVRNDEKRDGNVPVSLPTTVSEPQPVKVETDVEVTDVAKVSRSLRRKPCINYRQYDFCSDDELDTKRLDLNFSSRPPLLRGVIRGCPQCNNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVYRKGVDVTTLNGKNGDAGSYEAERFGFDPGPDFTLELFQKYADDFKSQYFSKPLNDTAKGCNPSMPQENEHWKPSLENIEGEYWRMVEKPSEEIEVLYGADLETGEFGSGFPKSCCQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKDTLDNLRWNNVCGKDGVLARAFKTRVELECAWRNFPCSSSQAIKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDANELNILLEALQGKLSAVYRWARQDLGLALSSSRELNSQSSAKSCGNPRLKELLRQSSLLPTLTAIDSPSHHAKKVSEVTASFLENKKVISTLNGSGKDVQQQNHKSEVKRENDELNHELVATNSRHAGSQCSKEDTNALNLVEVKKRMHKTCPENIILLSDDEGDEHKKMISNGLAESSLVKQLETSDRITDVDSKASLCNYNENAILRTPVTDATTMGEKEDRKLNNCQSSIEPLNNKQSQNVNLSVRNAANAVQKNKFSEAGLGHSNKVSPASTDTDSQKPQTCGSGKPNEGKPGNVGTGVTSCLLDTNRTTGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVISGKFWSNSQAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGREGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPHVQSPQLSQSTEISRNMQTTERNHGADPRPAGVDIVLRELLKKANLEELNSLYTLLNDNRPTVDRDVLTRLLKEEIQSHRR 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16185124 16213328 - Tan0016167.2 Tan08g1010 760902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1010 1235 Coils Coil 766 786 - -
Tan08g1010 1235 SMART JmjN_1 144 185 IPR003349 -
Tan08g1010 1235 FunFam Putative lysine-specific demethylase JMJ16 1005 1143 - -
Tan08g1010 1235 ProSiteProfiles FYR domain FYRN motif profile. 999 1057 IPR003888 GO:0005634(InterPro)
Tan08g1010 1235 SMART cupin_9 359 525 IPR003347 -
Tan08g1010 1235 Pfam C5HC2 zinc finger 615 666 IPR004198 -
Tan08g1010 1235 Gene3D - 1007 1143 - -
Tan08g1010 1235 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Tan08g1010 1235 SMART fyrn_3 1013 1057 IPR003888 GO:0005634(InterPro)
Tan08g1010 1235 MobiDBLite consensus disorder prediction 1153 1177 - -
Tan08g1010 1235 Pfam jmjN domain 146 179 IPR003349 -
Tan08g1010 1235 SUPERFAMILY Clavaminate synthase-like 325 552 - -
Tan08g1010 1235 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
Tan08g1010 1235 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
Tan08g1010 1235 Gene3D Cupin 130 509 - -
Tan08g1010 1235 Pfam F/Y-rich N-terminus 1013 1056 IPR003888 GO:0005634(InterPro)
Tan08g1010 1235 SMART fyrc_3 1063 1157 IPR003889 GO:0005634(InterPro)
Tan08g1010 1235 MobiDBLite consensus disorder prediction 921 949 - -
Tan08g1010 1235 MobiDBLite consensus disorder prediction 921 961 - -
Tan08g1010 1235 Pfam F/Y rich C-terminus 1061 1145 IPR003889 GO:0005634(InterPro)
Tan08g1010 1235 ProSiteProfiles FYR domain FYRC motif profile. 1059 1149 IPR003889 GO:0005634(InterPro)
Tan08g1010 1235 MobiDBLite consensus disorder prediction 1152 1184 - -
Tan08g1010 1235 PANTHER LYSINE-SPECIFIC DEMETHYLASE 137 919 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1010 Tan-Chr8:16185124 Tan11g0890 Tan-Chr11:7213613 9.50E-42 dispersed
Tan08g1009 Tan-Chr8:16185124 Tan08g1010 Tan-Chr8:16185124 0.00E+00 tandem
Tan08g1010 Tan-Chr8:16185124 Tan08g1011 Tan-Chr8:16185124 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28135 PF02373 JmjC 9.50E-45 CL0029 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1010 K11446 - csv:101208186 2131.68