Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1010 ATGGGGACAGAGCTTATCAGAGTTTGTGTTGAAGAAGATAGTGAGGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCCTTCCCTCTAGGGAAGGTGCGCAATGATGAGAAACGAGATGGTAATGTCCCCGTTAGTTTGCCAACAACTGTCTCTGAGCCACAACCAGTTAAAGTGGAAACTGACGTAGAAGTTACTGATGTTGCAAAAGTATCAAGGTCTCTCCGGCGGAAACCATGTATAAACTATAGACAATATGATTTCTGCTCTGACGATGAGCTTGATACTAAGCGTCTGGATCTGAATTTTTCTTCAAGGCCTCCTCTTTTGAGGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTCCAAAACCGAGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGAAGGAAAAGGAGGAGGGTTTATCGAAAGGGGGTTGATGTTACGACCTTAAATGGAAAAAATGGAGATGCTGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGAATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAATATTTTAGTAAACCACTAAATGATACTGCAAAGGGTTGTAATCCATCCATGCCACAAGAGAACGAACATTGGAAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAAGTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAGAGTTGCTGTCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATCTCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCATCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTAAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGCGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTCTTTGAAGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGAGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTACTGCTTGGTGCTGCAAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAAGATACTTTGGATAACTTACGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGTTGGAGTGTGCATGGAGGAACTTTCCTTGTAGTTCTTCTCAGGCAATTAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGTTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACGCCAATGAACTGAACATACTTCTTGAAGCATTGCAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCCCTCAGTTCATCCAGGGAGTTGAATTCTCAATCATCAGCCAAATCCTGTGGGAATCCTAGATTGAAAGAACTCTTGAGGCAATCTTCATTACTGCCAACTCTAACTGCTATTGACAGCCCTTCTCATCATGCCAAAAAGGTATCTGAAGTTACTGCTTCTTTTCTAGAAAATAAGAAGGTAATTTCCACACTTAATGGATCTGGGAAGGACGTTCAGCAGCAAAATCATAAATCTGAGGTGAAAAGAGAAAATGATGAACTAAACCACGAACTCGTGGCAACCAATTCAAGGCATGCAGGTTCACAGTGCTCTAAGGAGGATACAAATGCTCTGAATTTGGTAGAAGTGAAAAAGAGAATGCATAAAACGTGTCCTGAAAATATCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGATGATTTCAAATGGTTTAGCTGAAAGTTCATTAGTAAAACAGCTGGAAACTTCAGATCGGATCACTGATGTCGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGCACCCCGGTGACTGATGCAACGACCATGGGAGAAAAGGAAGACAGAAAATTGAATAATTGCCAATCAAGCATTGAACCTTTAAATAATAAACAGTCTCAAAACGTTAACTTATCAGTTAGAAATGCAGCTAATGCTGTTCAGAAAAACAAATTTTCAGAAGCAGGATTAGGTCATAGTAATAAAGTATCTCCAGCTTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAGCCGAATGAGGGTAAGCCTGGAAATGTGGGAACAGGTGTTACCTCTTGTTTGTTAGACACTAATAGAACTACTGGAAATTTATCCTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATTGTGATCTCAGGGAAGTTTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTATATAAGTGTTTTAGATCCATCAACGTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGGTTGTTTTGGAGCATTGCCCTAGTGAAGTATTCGTTCATGTTTCTGCTGCCAGATGTTGGGAGTTGGTTAGAGACCGAGTCAATCAGGAAATTGCGAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTTTACAGCCTCCTGGGAGTTTAGATGGGTTAGAGATGTTCGGCTTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGCGGTGAGTATTGGGACTCTCGGCCCTATTCTCGCCCTCATGTACAGAGTCCACAACTGTCCCAGTCAACAGAAATTAGTCGAAACATGCAAACAACCGAAAGGAACCACGGGGCCGATCCTCGGCCTGCTGGAGTTGATATAGTACTTAGGGAATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCGAGATGTGCTGACTCGACTTCTTAAAGAAGAGATTCAAAGTCATCGAAGATGA 3708 41.96 MGTELIRVCVEEDSEDFPSVPPGFESYISFPLGKVRNDEKRDGNVPVSLPTTVSEPQPVKVETDVEVTDVAKVSRSLRRKPCINYRQYDFCSDDELDTKRLDLNFSSRPPLLRGVIRGCPQCNNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVYRKGVDVTTLNGKNGDAGSYEAERFGFDPGPDFTLELFQKYADDFKSQYFSKPLNDTAKGCNPSMPQENEHWKPSLENIEGEYWRMVEKPSEEIEVLYGADLETGEFGSGFPKSCCQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKDTLDNLRWNNVCGKDGVLARAFKTRVELECAWRNFPCSSSQAIKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDANELNILLEALQGKLSAVYRWARQDLGLALSSSRELNSQSSAKSCGNPRLKELLRQSSLLPTLTAIDSPSHHAKKVSEVTASFLENKKVISTLNGSGKDVQQQNHKSEVKRENDELNHELVATNSRHAGSQCSKEDTNALNLVEVKKRMHKTCPENIILLSDDEGDEHKKMISNGLAESSLVKQLETSDRITDVDSKASLCNYNENAILRTPVTDATTMGEKEDRKLNNCQSSIEPLNNKQSQNVNLSVRNAANAVQKNKFSEAGLGHSNKVSPASTDTDSQKPQTCGSGKPNEGKPGNVGTGVTSCLLDTNRTTGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVISGKFWSNSQAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGREGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPHVQSPQLSQSTEISRNMQTTERNHGADPRPAGVDIVLRELLKKANLEELNSLYTLLNDNRPTVDRDVLTRLLKEEIQSHRR 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16185124 16213328 - Tan0016167.2 Tan08g1010 760902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1010 1235 Coils Coil 766 786 - -
Tan08g1010 1235 SMART JmjN_1 144 185 IPR003349 -
Tan08g1010 1235 FunFam Putative lysine-specific demethylase JMJ16 1005 1143 - -
Tan08g1010 1235 ProSiteProfiles FYR domain FYRN motif profile. 999 1057 IPR003888 GO:0005634(InterPro)
Tan08g1010 1235 SMART cupin_9 359 525 IPR003347 -
Tan08g1010 1235 Pfam C5HC2 zinc finger 615 666 IPR004198 -
Tan08g1010 1235 Gene3D - 1007 1143 - -
Tan08g1010 1235 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Tan08g1010 1235 SMART fyrn_3 1013 1057 IPR003888 GO:0005634(InterPro)
Tan08g1010 1235 MobiDBLite consensus disorder prediction 1153 1177 - -
Tan08g1010 1235 Pfam jmjN domain 146 179 IPR003349 -
Tan08g1010 1235 SUPERFAMILY Clavaminate synthase-like 325 552 - -
Tan08g1010 1235 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
Tan08g1010 1235 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
Tan08g1010 1235 Gene3D Cupin 130 509 - -
Tan08g1010 1235 Pfam F/Y-rich N-terminus 1013 1056 IPR003888 GO:0005634(InterPro)
Tan08g1010 1235 SMART fyrc_3 1063 1157 IPR003889 GO:0005634(InterPro)
Tan08g1010 1235 MobiDBLite consensus disorder prediction 921 949 - -
Tan08g1010 1235 MobiDBLite consensus disorder prediction 921 961 - -
Tan08g1010 1235 Pfam F/Y rich C-terminus 1061 1145 IPR003889 GO:0005634(InterPro)
Tan08g1010 1235 ProSiteProfiles FYR domain FYRC motif profile. 1059 1149 IPR003889 GO:0005634(InterPro)
Tan08g1010 1235 MobiDBLite consensus disorder prediction 1152 1184 - -
Tan08g1010 1235 PANTHER LYSINE-SPECIFIC DEMETHYLASE 137 919 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1010 K11446 - - csv:101208186 2131.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1010 Tan-Chr8:16185124 Tan11g0890 Tan-Chr11:7213613 9.50E-42 dispersed
Tan08g1009 Tan-Chr8:16185124 Tan08g1010 Tan-Chr8:16185124 0.00E+00 tandem
Tan08g1010 Tan-Chr8:16185124 Tan08g1011 Tan-Chr8:16185124 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1011 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan08g1009 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan08g1010 . 1 1234 JUMONJI Transcription Factor Family AT1G08620 53.6 0.0e+00 1258.0
Tan05g2759 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2762 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2763 . 28 965 JUMONJI Transcription Factor Family AT1G30810 50.5 8.9e-246 847.4
Tan05g2760 . 28 948 JUMONJI Transcription Factor Family AT1G30810 51.2 3.4e-245 845.5
Tan05g2761 . 28 948 JUMONJI Transcription Factor Family AT1G30810 51.2 3.4e-245 845.5
Tan05g2760 . 64 948 JUMONJI Transcription Factor Family AT4G20400 51.5 3.5e-243 839.0
Tan05g2761 . 64 948 JUMONJI Transcription Factor Family AT4G20400 51.5 3.5e-243 839.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28135 PF02373 JmjC 9.50E-45 CL0029 Tan TR