Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1010 | ATGGGGACAGAGCTTATCAGAGTTTGTGTTGAAGAAGATAGTGAGGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCCTTCCCTCTAGGGAAGGTGCGCAATGATGAGAAACGAGATGGTAATGTCCCCGTTAGTTTGCCAACAACTGTCTCTGAGCCACAACCAGTTAAAGTGGAAACTGACGTAGAAGTTACTGATGTTGCAAAAGTATCAAGGTCTCTCCGGCGGAAACCATGTATAAACTATAGACAATATGATTTCTGCTCTGACGATGAGCTTGATACTAAGCGTCTGGATCTGAATTTTTCTTCAAGGCCTCCTCTTTTGAGGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTCCAAAACCGAGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGAAGGAAAAGGAGGAGGGTTTATCGAAAGGGGGTTGATGTTACGACCTTAAATGGAAAAAATGGAGATGCTGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGAATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAATATTTTAGTAAACCACTAAATGATACTGCAAAGGGTTGTAATCCATCCATGCCACAAGAGAACGAACATTGGAAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAAGTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAGAGTTGCTGTCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATCTCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCATCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTAAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGCGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTCTTTGAAGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGAGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTACTGCTTGGTGCTGCAAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAAGATACTTTGGATAACTTACGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGTTGGAGTGTGCATGGAGGAACTTTCCTTGTAGTTCTTCTCAGGCAATTAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGTTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACGCCAATGAACTGAACATACTTCTTGAAGCATTGCAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCCCTCAGTTCATCCAGGGAGTTGAATTCTCAATCATCAGCCAAATCCTGTGGGAATCCTAGATTGAAAGAACTCTTGAGGCAATCTTCATTACTGCCAACTCTAACTGCTATTGACAGCCCTTCTCATCATGCCAAAAAGGTATCTGAAGTTACTGCTTCTTTTCTAGAAAATAAGAAGGTAATTTCCACACTTAATGGATCTGGGAAGGACGTTCAGCAGCAAAATCATAAATCTGAGGTGAAAAGAGAAAATGATGAACTAAACCACGAACTCGTGGCAACCAATTCAAGGCATGCAGGTTCACAGTGCTCTAAGGAGGATACAAATGCTCTGAATTTGGTAGAAGTGAAAAAGAGAATGCATAAAACGTGTCCTGAAAATATCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGATGATTTCAAATGGTTTAGCTGAAAGTTCATTAGTAAAACAGCTGGAAACTTCAGATCGGATCACTGATGTCGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGCACCCCGGTGACTGATGCAACGACCATGGGAGAAAAGGAAGACAGAAAATTGAATAATTGCCAATCAAGCATTGAACCTTTAAATAATAAACAGTCTCAAAACGTTAACTTATCAGTTAGAAATGCAGCTAATGCTGTTCAGAAAAACAAATTTTCAGAAGCAGGATTAGGTCATAGTAATAAAGTATCTCCAGCTTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAGCCGAATGAGGGTAAGCCTGGAAATGTGGGAACAGGTGTTACCTCTTGTTTGTTAGACACTAATAGAACTACTGGAAATTTATCCTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATTGTGATCTCAGGGAAGTTTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTATATAAGTGTTTTAGATCCATCAACGTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGGTTGTTTTGGAGCATTGCCCTAGTGAAGTATTCGTTCATGTTTCTGCTGCCAGATGTTGGGAGTTGGTTAGAGACCGAGTCAATCAGGAAATTGCGAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTTTACAGCCTCCTGGGAGTTTAGATGGGTTAGAGATGTTCGGCTTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGCGGTGAGTATTGGGACTCTCGGCCCTATTCTCGCCCTCATGTACAGAGTCCACAACTGTCCCAGTCAACAGAAATTAGTCGAAACATGCAAACAACCGAAAGGAACCACGGGGCCGATCCTCGGCCTGCTGGAGTTGATATAGTACTTAGGGAATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCGAGATGTGCTGACTCGACTTCTTAAAGAAGAGATTCAAAGTCATCGAAGATGA | 3708 | 41.96 | MGTELIRVCVEEDSEDFPSVPPGFESYISFPLGKVRNDEKRDGNVPVSLPTTVSEPQPVKVETDVEVTDVAKVSRSLRRKPCINYRQYDFCSDDELDTKRLDLNFSSRPPLLRGVIRGCPQCNNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVYRKGVDVTTLNGKNGDAGSYEAERFGFDPGPDFTLELFQKYADDFKSQYFSKPLNDTAKGCNPSMPQENEHWKPSLENIEGEYWRMVEKPSEEIEVLYGADLETGEFGSGFPKSCCQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKDTLDNLRWNNVCGKDGVLARAFKTRVELECAWRNFPCSSSQAIKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDANELNILLEALQGKLSAVYRWARQDLGLALSSSRELNSQSSAKSCGNPRLKELLRQSSLLPTLTAIDSPSHHAKKVSEVTASFLENKKVISTLNGSGKDVQQQNHKSEVKRENDELNHELVATNSRHAGSQCSKEDTNALNLVEVKKRMHKTCPENIILLSDDEGDEHKKMISNGLAESSLVKQLETSDRITDVDSKASLCNYNENAILRTPVTDATTMGEKEDRKLNNCQSSIEPLNNKQSQNVNLSVRNAANAVQKNKFSEAGLGHSNKVSPASTDTDSQKPQTCGSGKPNEGKPGNVGTGVTSCLLDTNRTTGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVISGKFWSNSQAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGREGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPHVQSPQLSQSTEISRNMQTTERNHGADPRPAGVDIVLRELLKKANLEELNSLYTLLNDNRPTVDRDVLTRLLKEEIQSHRR | 1235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 16185124 | 16213328 | - | Tan0016167.2 | Tan08g1010 | 760902 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1010 | 1235 | Coils | Coil | 766 | 786 | - | - | |
Tan08g1010 | 1235 | SMART | JmjN_1 | 144 | 185 | IPR003349 | - | |
Tan08g1010 | 1235 | FunFam | Putative lysine-specific demethylase JMJ16 | 1005 | 1143 | - | - | |
Tan08g1010 | 1235 | ProSiteProfiles | FYR domain FYRN motif profile. | 999 | 1057 | IPR003888 | GO:0005634(InterPro) | |
Tan08g1010 | 1235 | SMART | cupin_9 | 359 | 525 | IPR003347 | - | |
Tan08g1010 | 1235 | Pfam | C5HC2 zinc finger | 615 | 666 | IPR004198 | - | |
Tan08g1010 | 1235 | Gene3D | - | 1007 | 1143 | - | - | |
Tan08g1010 | 1235 | ProSiteProfiles | JmjN domain profile. | 145 | 186 | IPR003349 | - | |
Tan08g1010 | 1235 | SMART | fyrn_3 | 1013 | 1057 | IPR003888 | GO:0005634(InterPro) | |
Tan08g1010 | 1235 | MobiDBLite | consensus disorder prediction | 1153 | 1177 | - | - | |
Tan08g1010 | 1235 | Pfam | jmjN domain | 146 | 179 | IPR003349 | - | |
Tan08g1010 | 1235 | SUPERFAMILY | Clavaminate synthase-like | 325 | 552 | - | - | |
Tan08g1010 | 1235 | ProSiteProfiles | JmjC domain profile. | 359 | 525 | IPR003347 | - | |
Tan08g1010 | 1235 | Pfam | JmjC domain, hydroxylase | 392 | 508 | IPR003347 | - | |
Tan08g1010 | 1235 | Gene3D | Cupin | 130 | 509 | - | - | |
Tan08g1010 | 1235 | Pfam | F/Y-rich N-terminus | 1013 | 1056 | IPR003888 | GO:0005634(InterPro) | |
Tan08g1010 | 1235 | SMART | fyrc_3 | 1063 | 1157 | IPR003889 | GO:0005634(InterPro) | |
Tan08g1010 | 1235 | MobiDBLite | consensus disorder prediction | 921 | 949 | - | - | |
Tan08g1010 | 1235 | MobiDBLite | consensus disorder prediction | 921 | 961 | - | - | |
Tan08g1010 | 1235 | Pfam | F/Y rich C-terminus | 1061 | 1145 | IPR003889 | GO:0005634(InterPro) | |
Tan08g1010 | 1235 | ProSiteProfiles | FYR domain FYRC motif profile. | 1059 | 1149 | IPR003889 | GO:0005634(InterPro) | |
Tan08g1010 | 1235 | MobiDBLite | consensus disorder prediction | 1152 | 1184 | - | - | |
Tan08g1010 | 1235 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 137 | 919 | - | GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g1010 | Tan-Chr8:16185124 | Tan11g0890 | Tan-Chr11:7213613 | 9.50E-42 | dispersed | |
Tan08g1009 | Tan-Chr8:16185124 | Tan08g1010 | Tan-Chr8:16185124 | 0.00E+00 | tandem | |
Tan08g1010 | Tan-Chr8:16185124 | Tan08g1011 | Tan-Chr8:16185124 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28135 | PF02373 | JmjC | 9.50E-45 | CL0029 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1010 | K11446 | - | csv:101208186 | 2131.68 |