Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1053 ATGGCCACTCTTTCTTGCCAAACTTCCGACTTGGCGTTGCTCCTCGGCTCCACCGCCACCACCAATTCCACCGCCATCGCCGAGTTTCTATGCTCAAGGTTCAACACCGTCGCCACCACTTTCAGCTCTACCACCTACGCCGTCGACAATACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTCGGCTTTGCAATGCTTTGCGCTGGCTCGGTCCGAGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGATGCTGCCGCTGGCGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCTAACTCCTTCATCGGCCGCCACTTTTTTGGCCTCTCTAATTTTCCTAATCCAACCACAGACTATAGCTTCTTCCTCTATCAATGGGCCTTTGCTATTGCTGCAGCAGGAATCACAAGCGGCTCTATAGCCGAGCGAACCCAATTCGTAGCTTACCTCATCTACTCCACCGTCCTAACCGGCTTCGTGTACCCAATAGTCTCCCACTGGTTCTGGTCCGGCGACGGGTGGGCCAGCCCAAGCCGATCTAATAACCTCCTATTCAACTCTGGCGCAATCGACTTCGCCGGGTCGGGCGTCGTTCACATGGTCGGCGGCATAGCCGGCCTTTGGGGCGCCTTAATCGAAGGTCCCCGAATCGGCCGGTTCGACCGCTCCGGCCGGTCCGTCGCCCTCCGCGGCCACAGCGCCTCCTTAGTAGTCCTCGGCTCATTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCGGGTTCCTTCCTAACCATCTCCAAATCCTACAACGACGGCCGCCCTTATTACGGCCAATGGAGCGCCATCGGCCGAACCGGAGTCACGACGACACTAGCCGGATGCACAGCCGCCCTAACAACGCTCTTCACAAAACGCCTCTTAGTCGGGCATTGGAACGTAATCGACGTCTGCAACGGCCTATTAGGTGGGTTCGCGGCCATCACATCGGGGTGCGCCGTAGTGGAGCCATGGGCGGCGGTGATATGCGGATTCGTAGCGTCGTGGGTTCTAACCGGGTTCAACAAACTAGCCGAGAGGTTCAGCTACGACGACCCATTGGAGGCGGCGCAACTGCACGGAGGGTGCGGGGCGTGGGGGCTGATATTCACGGGGCTGTTCGCGAGAAAGGAGTATGTGGCGGAGGTGTATAAGGCAGGGCGGCCGTTCGGGCTGTTGATGGGCGGCGGAGGGAGGCTGCTGGCGGCGCAGTTGGTGGAGATAGCGGCAATAGTGGGGTGGGTATCGGTAACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGCGAAACTTCTGAGAATTTCAAGGGAGGATGAGATGGCAGGGATGGATCTGACGAGGCATGGGGGGTTTGCTTACGTGTACAATGACGAGGACGATCCGTCTGGGAAGCCGGCTGGGTTTATGATGAGGAAGATTGAGCCTGCCGATGGGAGTCCCAGTCCTGCCGATGACCGTACTCCTTCTGGAATGGCGGCGGTTTGA 1542 58.3 MATLSCQTSDLALLLGSTATTNSTAIAEFLCSRFNTVATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPTTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSGDGWASPSRSNNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAERFSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYKAGRPFGLLMGGGGRLLAAQLVEIAAIVGWVSVTMGGLFYGLKKAKLLRISREDEMAGMDLTRHGGFAYVYNDEDDPSGKPAGFMMRKIEPADGSPSPADDRTPSGMAAV 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18443531 18446203 - Tan0022718.1 Tan08g1053 760945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1053 513 FunFam Ammonium transporter 30 487 - -
Tan08g1053 513 Gene3D Ammonium transporter AmtB like domains 29 485 IPR029020 -
Tan08g1053 513 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan08g1053 513 MobiDBLite consensus disorder prediction 483 513 - -
Tan08g1053 513 SUPERFAMILY Ammonium transporter 46 453 - -
Tan08g1053 513 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan08g1053 513 PANTHER AMMONIUM TRANSPORTER 18 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Tan08g1053 513 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g2156 Tan-Chr7:73198943 Tan08g1053 Tan-Chr8:18443531 3.40E-205 dispersed
Tan08g1053 Tan-Chr8:18443531 Tan10g0608 Tan-Chr10:4967294 2.10E-205 dispersed
Tan08g1053 Tan-Chr8:18443531 Tan06g2341 Tan-Chr6:75480335 7.10E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1053 K03320 - csv:101222356 908.672