Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1092 | ATGGGCGTCGTGGGAGGCACTCAAACGCAGTCTGCAAATCCGAACATGGGAAGTGAAAAGCCGAAGGTGGTGGTGATTATGGGGCCGACCGGTTCTGGGAAGTCCCGTCTCGCCATCGATTTGGCTTCTCACTTCCCCCTCGAGATCATCAACGCCGATTCTATGCAGGTTTATCGCGGATTGGACGTTCTCACAAACAAGGTTCCTCCCGAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCTAAAGACTTCCGAGATTCTGCCATTCCTGTTATTGATGACATATTCTCACGTGGGTGCTTGCCAATGATAGTGGGTGGAACGAATTATTATATACAGGCTCTTGTTAGCCCATTTCTTCTGGATGACTCTGCTGAAAAGGTTAGCGGAAGTTGCTCCAGTTATCTTGGAGATGAGGAACTGGGTATTGAGTTGGATGAGGGAAGAGATGGATTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCGGCTGACAGACTCCATCCTAATAACCACAGAAAAATAAATCAATACCTGAATTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGTCAAGCTTATAGTTTCAGATACGATTGCTGCTTGGTATGTGTAGATGCTTCTGTTCCACAACTTGACGGACATGTTGATTCTAGAGTTGATAGCATGTTGGCTGCTGGATTACTTGATGAGGTCTATGATATTTACAATCCAAATGCAAACTATACTAGAGGATTGCGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGGTATTATGTACCTAAAGGTAGATGTGACAAAGATAGTGGTGGGCTTAGTCCAAAAAATTCAAGGGAGGAGTGTAATGAGATTTTGAAAGAGAATATGAGGTCCATCCTACATTCACCAAGTGATGGACGATCCAGTTTGCTACTGAAAGAAGCCATAGATAATGTCAAGTTGAATACTAAAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAAACCTTGTTTGGATGGAAGATCCACTATGTTGATTCCACTGAATATATAACACGCAAAGTGGAGGATTCATGGACTGCCCAAGTCGTTGAACCTGCAGTCCAGATAATTAGGTCTTTCCTTGAAGATAGTTGTTCTGCGACTGAGACAATGAACCCACATAATTCTGGGCAAGTAATCAAAAAGGACTTGTGGACACAATATATTTGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACCATCAAGGTCGTACACATCGAAAGCGAATGTATCGGCTTAAGAAGAAATGTGAAGGACTTTCCTTACTGCAACAGAAACTACCTCAAGAGTAA | 1428 | 43.42 | MGVVGGTQTQSANPNMGSEKPKVVVIMGPTGSGKSRLAIDLASHFPLEIINADSMQVYRGLDVLTNKVPPEDQNGVPHHLLGTVSPDVEFTAKDFRDSAIPVIDDIFSRGCLPMIVGGTNYYIQALVSPFLLDDSAEKVSGSCSSYLGDEELGIELDEGRDGLKYDHNHLKEIDPVSADRLHPNNHRKINQYLNLYYRTGVLPSTLFQGKAAENWGQAYSFRYDCCLVCVDASVPQLDGHVDSRVDSMLAAGLLDEVYDIYNPNANYTRGLRQAIGVREFEEFLRYYVPKGRCDKDSGGLSPKNSREECNEILKENMRSILHSPSDGRSSLLLKEAIDNVKLNTKRLVRRQRRQLKRLETLFGWKIHYVDSTEYITRKVEDSWTAQVVEPAVQIIRSFLEDSCSATETMNPHNSGQVIKKDLWTQYICQACGNKVLRGAHEWEQHHQGRTHRKRMYRLKKKCEGLSLLQQKLPQE | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21143014 | 21184395 | + | Tan0000714.1 | Tan08g1092 | 760984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1092 | 475 | Gene3D | Classic Zinc Finger | 424 | 464 | - | - | |
Tan08g1092 | 475 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Tan08g1092 | 475 | FunFam | tRNA dimethylallyltransferase | 421 | 463 | - | - | |
Tan08g1092 | 475 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Tan08g1092 | 475 | Gene3D | - | 149 | 210 | - | - | |
Tan08g1092 | 475 | PANTHER | TRNA DIMETHYLALLYLTRANSFERASE | 22 | 411 | IPR039657 | GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER) | |
Tan08g1092 | 475 | Hamap | tRNA dimethylallyltransferase [miaA]. | 23 | 400 | IPR018022 | GO:0008033(InterPro)|GO:0052381(InterPro) | |
Tan08g1092 | 475 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 24 | 129 | IPR027417 | - | |
Tan08g1092 | 475 | Pfam | IPP transferase | 56 | 356 | - | - | |
Tan08g1092 | 475 | NCBIfam | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | 23 | 285 | IPR018022 | GO:0008033(InterPro)|GO:0052381(InterPro) | |
Tan08g1092 | 475 | Gene3D | - | 21 | 423 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0864 | Tan-Chr1:8301786 | Tan08g1092 | Tan-Chr8:21143014 | 1.10E-20 | dispersed | |
Tan08g1092 | Tan-Chr8:21143014 | Tan11g1864 | Tan-Chr11:23580691 | 1.50E-48 | dispersed | |
Tan08g1092 | Tan-Chr8:21143014 | Tan06g2568 | Tan-Chr6:78361699 | 2.10E-50 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1092 | K00791 | - | csv:101202758 | 814.683 |