Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1153 ATGTCTCGCCGAGGTGGTGGTGGCGGTGGACGTGGTTCTGGAGGTCGCGGAGGACAGCCGTCTCCGGCTGTATCTCGCGGCGGCGGCGGTGGAAGAGGTGGCGGAGGAAGAGGTGGTAGAGGCGGCGGTGAGAGAGATGGAGGTCGGGGAGGATATCTGGCTCCTCAACAGTATCATTCTCCTACTCCTCAGCCACCTCCGGTTGCTTCTCGTCCTCCTCCTGAGACTACAACGGGACCTTCTTCTTCTTCCTCTTCTGCAACTGCTGCTCCCTCGAAGTCAGAGGCTTCTTCTTCGAAGATCGAGGCACAAGTTGATCAGTTGACATTGGCGCCGGAGAAAGTTCCGCCGTCTTCATCTAAGGCTCTGACTGTGGCGAAGAGGCCGGGATATGGAACCGTGGGGAACAAAGTCGTTGTTCGGGCTAATCATTTTCTGGTTCAAATTGAAGATAAAGAACTCTACCATTATGATGTGTCTATCACACCTGAAGTAACATCTAAGAAGGTGTGCCGAGATATAATAAAGCAGCTAGTTGAAATGTACCAAAACTCTCATTTAGGTGGGAGGGTTCTAGCCTACGATGGTGGTAAAAGTGTTTATGTTGCTGGACAACTTCCGTTTACTTCGAAAGAGTTCATGATTAAACTAGTCCGTAGTGATGATGTTGGATCTTCCAAACCAACAAGAAAGGAACGTGAATTCAAGGTTTCTATCAAGTATGCATCCAAGCCAGACCTCCATCATCTGCAACAGTTTTTACGTGGACGACAGCGAGACGCTCCACAAGAAACTATCCAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTGTCAGCTATACAGTTGTAGGAAGGTCATTCTTCTCTTCTGATTTTGGAGCACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAGATGGGTCTATCTCTAAATATAGATGTGTCAGCTAGATCATTTTATGAACCAATATGCGTGACCGACTATGTTGCCAAACACTTCAATCTAAGGAATTTCTCAAGGCCGTTATCTGATCAGGACATCCGAAAGATTAAAAGAGTGCTGAAAGGGGTGAAGGTGGCATTAATGTATAGGGAGCATGCCAGAACATACAAAATTACTGGGATATCATCCGAGCCAATTAACAGATTAATGTTTACTCTTGATGATCAGAGAACTCGAATATCTGTTGCACAATACTTTCATGAAAAATACAGTGTTGTGCTCCAATTTCCATCCCTACCTGCCTTGCAAGCTGGTAATGATGCGAAGCCCATCTATTTACCTATGGAGGTTTGTACGATTGTTCGTGGGCAGAGATATACCAAGAAATTGAATGAACGGCAAGTAACTGAGCTATTAAGAGCGACTTGTCAGAGACCTCCACAGAGGCAAAGTAGTATAGAGAATACTGTTAAATGGAATAAGTATTCTGAAGATCCTATTGTTAAGGATTTTGGGATTAAGGTTATTGAAAATTTATGTGATGTTGATGCTCGAGTTTTGCCACCTCCATCGCTCAAATATCATGAAACAGGCAAGGAATCAAGAGTTGACCCAAGGATGGGTCAGTGGAATATGATTAACAAGAAAATGATCAATGGTGGTAGAGTAGATCACTGGGCATGTGTGAACTTCTCATCACGGTTAGATCCAGGTCTGCCTTCTGAATTTTGTCATCAGTTGGTTGGCATGTGCGTTAGTAAAGGAATGGTTTTCAATCCTAAGCCGTTGTTTGCGATCCGTAATGCACATGCGAATCAAATTGATAGTGCACTTAGAGAGATTCATAATCAGTCTGTGAGAAGTTTGGGACCCCAGGGCAAGTCTCTTCAGTTGCTCATTATTATTTTACCTGATGTTACTGGTTCCTATGGAAAGATCAAACGGATCTGCGAGACTGAACTTGGGATTGTTTCACAGTGTTGCCAACCTAGGCAGGCACAGAAGCTGAGCAAGCAATATTTTGAAAATGTGGCCCTAAAAATTAATGTGAAGGTTGGAGGAAGAAACAATGTCCTAAGTGATGCTATTCAGCGCAAGATTCCACTTGTGACTGATAAACCTACCATCATCTTTGGAGCTGATGTAACACACCCCCAACCAGGAGAGGATTCAAGTCCTTCGATAGCAGCTGTTGTTGCCTCAATGGATTGGCCCGAGGTAACCAAGTATAGAGGTATCGTTTCAGCCCAGGCTCATCGTGAAGAAATTATTCAAGATTTGTATACACAAATTCAAGATCCTCAAAGGGGCTTGGTGCATGCCGGGATGATTAGGGAGCTGTTCATTGCTTTTCGAAGGTCGACGAATATGAAACCACACAGAATAATATTCTACAGAGATGGTGTAAGTGAAGGCCAGTTTAGTCAAGTTCTACTCTATGAGATGGATGCAATCAGAAAGGCATGTGCCTCCCTTGAAGAGGGTTACCAACCTCGTGTAACCTTTATAGTGGTTCAAAAGAGGCATCACACTCGTCTTTTTCCCACCAATCGTGATACTGACCGGAGTGGAAACATTCTTCCAGGTACTGTGGTTGATACAAAAATCTGTCATCCTACGGAATTTGATTTCTATTTGAACAGCCATGCTGGCATACAGGGAACAAGTAGACCAACTCATTATCATGTTCTATTTGATGAAAACAATTTCAGTGCAGATGCAATGCAAATGCTCACTAATAATCTTTGCTACACCTATGCGCGGTGCACACGGTCTGTTTCCATTGTTCCGCCTGCATACTATGCCCATCTAGCAGCATTTCGTGCTCGCTATTACATGGAGGGTGATTCATCCGATAGCGGTTCCACGAGTTCGGGAGGTGGGAATGTGGAAATTCAAGCATTGCCAAGCATCAAAGAAAATGTGAAGGATGTCATGTTTTACTGCTGA 2928 44.13 MSRRGGGGGGRGSGGRGGQPSPAVSRGGGGGRGGGGRGGRGGGERDGGRGGYLAPQQYHSPTPQPPPVASRPPPETTTGPSSSSSSATAAPSKSEASSSKIEAQVDQLTLAPEKVPPSSSKALTVAKRPGYGTVGNKVVVRANHFLVQIEDKELYHYDVSITPEVTSKKVCRDIIKQLVEMYQNSHLGGRVLAYDGGKSVYVAGQLPFTSKEFMIKLVRSDDVGSSKPTRKEREFKVSIKYASKPDLHHLQQFLRGRQRDAPQETIQVLDVVLRTKPSVSYTVVGRSFFSSDFGAPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSRPLSDQDIRKIKRVLKGVKVALMYREHARTYKITGISSEPINRLMFTLDDQRTRISVAQYFHEKYSVVLQFPSLPALQAGNDAKPIYLPMEVCTIVRGQRYTKKLNERQVTELLRATCQRPPQRQSSIENTVKWNKYSEDPIVKDFGIKVIENLCDVDARVLPPPSLKYHETGKESRVDPRMGQWNMINKKMINGGRVDHWACVNFSSRLDPGLPSEFCHQLVGMCVSKGMVFNPKPLFAIRNAHANQIDSALREIHNQSVRSLGPQGKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPRQAQKLSKQYFENVALKINVKVGGRNNVLSDAIQRKIPLVTDKPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYTQIQDPQRGLVHAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEEGYQPRVTFIVVQKRHHTRLFPTNRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQALPSIKENVKDVMFYC 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25484847 25491967 + Tan0006070.1 Tan08g1153 761045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1153 975 ProSiteProfiles PAZ domain profile. 336 448 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan08g1153 975 Gene3D - 693 975 IPR036397 GO:0003676(InterPro)
Tan08g1153 975 CDD Piwi_ago-like 492 939 IPR045246 -
Tan08g1153 975 Pfam PAZ domain 358 464 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan08g1153 975 Pfam N-terminal domain of argonaute 137 273 IPR032474 -
Tan08g1153 975 Gene3D - 512 686 - -
Tan08g1153 975 SMART DUF1785_2 282 334 IPR014811 -
Tan08g1153 975 Pfam Argonaute linker 2 domain 474 520 IPR032472 -
Tan08g1153 975 SMART PAZ_2_a_3 337 470 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan08g1153 975 MobiDBLite consensus disorder prediction 75 104 - -
Tan08g1153 975 SUPERFAMILY PAZ domain 331 488 IPR036085 GO:0005515(InterPro)
Tan08g1153 975 CDD PAZ_argonaute_like 334 447 - -
Tan08g1153 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 128 946 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Tan08g1153 975 ProSiteProfiles Piwi domain profile. 624 940 IPR003165 GO:0003676(InterPro)
Tan08g1153 975 SUPERFAMILY Ribonuclease H-like 619 941 IPR012337 -
Tan08g1153 975 MobiDBLite consensus disorder prediction 59 74 - -
Tan08g1153 975 Pfam Argonaute linker 1 domain 284 333 IPR014811 -
Tan08g1153 975 SMART Piwi_a_2 624 940 IPR003165 GO:0003676(InterPro)
Tan08g1153 975 Pfam Mid domain of argonaute 531 609 IPR032473 -
Tan08g1153 975 FunFam Argonaute 10 512 686 - -
Tan08g1153 975 Pfam Piwi domain 625 939 IPR003165 GO:0003676(InterPro)
Tan08g1153 975 Gene3D paz domain 329 452 - -
Tan08g1153 975 FunFam protein argonaute 10-like 692 975 - -
Tan08g1153 975 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0605 Tan-Chr7:9616741 Tan08g1153 Tan-Chr8:25484847 2.30E-146 dispersed
Tan07g0606 Tan-Chr7:9616741 Tan08g1153 Tan-Chr8:25484847 2.30E-146 dispersed
Tan08g1153 Tan-Chr8:25484847 Tan10g0779 Tan-Chr10:6480366 1.00E-304 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1153 K11593 - csv:116403995 1552.34