Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1157 ATGGCGCTCTCTCCATCCGTACAACTCATTCAACTTCCTCCTCAGGCACTATCCTCGTCCTCTCACCATCTTCTCATCTCTGACCTCGGCTCCGTATCGCGCTTCTTCCGATCTCAATGGCTTTCCTCTTTGGCTCCATCGCTGAACCGCAGGATGAAGTTATCTTCGAGAACGAAGTGTTTTTCTATGTCCACCGAGGAGGAGCAGTGGAGTGAATCGGAAGCGTTGGTGTCCGATGTGGACGAAGGGGGCGATCGTGAGGATGATATTGGTGTCCAGCAACAGAGTTCTGTGGTCACTGCTGCTCCTGCGCAGAGGATTTCTTCCTCATCGCCGAGTGATTATCTGTCGCTTGCGATTCGAGAGCCGGTTTATGAGGTGTTAGAGGTTAAGGCAGATGGAGCTGTATCCACTAGGAAGATTAACAGACGCCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTTCGTGAACATGCTATTTTGCTTAATCTGGGTTCGCTTCGAGCAATAGCTATGCAGGATTGTGTCCTCATATTTGATTATAACCGTCCAGGAGGACAAGCTTTTATCGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGAAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCGTTGCTTTCGCGAACACAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCTGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACTTTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATTCGACGTATCTGCATTATGGGAAGAAATTGCACGCTTAATAAGAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCTGATGGTAAATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGGCGACTGGAGGTTAGCAGGGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCTGTTGGTGCTTTAGTTGCAGGAATATTTGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGCGCTGTTGTGGCATTTTTTCTCATGTATTCATATCTCAGAGATAGGAGAATCCTATAG 1323 46.03 MALSPSVQLIQLPPQALSSSSHHLLISDLGSVSRFFRSQWLSSLAPSLNRRMKLSSRTKCFSMSTEEEQWSESEALVSDVDEGGDREDDIGVQQQSSVVTAAPAQRISSSSPSDYLSLAIREPVYEVLEVKADGAVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPEMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADGKCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25627475 25672304 + Tan0001794.1 Tan08g1157 761049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1157 440 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 106 439 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Tan08g1157 440 Gene3D - 118 201 - -
Tan08g1157 440 CDD Mrs2_Mfm1p-like 127 439 IPR039204 -
Tan08g1157 440 Gene3D Magnesium transport protein CorA, transmembrane region 204 371 - -
Tan08g1157 440 FunFam Magnesium transporter MRS2-11, chloroplastic 120 201 - -
Tan08g1157 440 Pfam Magnesium transporter MRS2-like 132 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1157 K16075 - - csv:101219314 695.656
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g2493 . 1 447 MRS2 Gene Family AT1G16010 84.1 4.1e-205 711.4
Tan02g2275 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G16010 54.5 7.5e-82 302.0
Tan07g2270 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan07g2271 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan06g2463 . 1 364 MRS2 Gene Family AT5G64560 80.2 1.8e-156 549.7
Tan07g2269 . 1 367 MRS2 Gene Family AT5G64560 70.3 1.2e-133 473.8
Tan07g2271 . 1 327 MRS2 Gene Family AT5G64560 69.8 7.5e-115 411.4
Tan07g2270 . 1 326 MRS2 Gene Family AT5G64560 70.0 9.8e-115 411.0
Tan02g1037 . 14 495 MRS2 Gene Family AT3G19640 64.0 1.6e-154 543.5
Tan01g0792 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan01g0793 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan02g2275 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2276 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2277 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan04g2493 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.7e-112 403.7
Tan02g2278 . 6 285 MRS2 Gene Family AT2G03620 67.7 7.9e-97 351.7
Tan01g0792 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan01g0793 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan06g2463 . 1 326 MRS2 Gene Family AT5G09690 74.8 2.3e-125 446.0
Tan07g2269 . 1 329 MRS2 Gene Family AT5G09690 66.3 1.1e-111 400.6
Tan07g2270 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan07g2271 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan04g2493 . 40 383 MRS2 Gene Family AT5G09690 50.9 9.6e-79 291.2
Tan06g2463 . 23 286 MRS2 Gene Family AT5G09720 67.5 7.2e-89 324.7
Tan07g2269 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2270 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2271 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan04g2493 . 1 447 MRS2 Gene Family AT1G80900 82.8 6.8e-200 694.1
Tan02g2275 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G80900 54.5 1.3e-78 291.2
Tan07g2270 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan07g2271 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan08g1157 . 18 439 MRS2 Gene Family AT5G22830 66.7 2.2e-148 523.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41