Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1171 ATGCTCCATCTTCCTTCACAACATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTCCCTTCTGATTCCCATTCAACCTCTCTCCTTTACAACCTCTCAATTTTGAAAGAGAAACTCCACCAAATCCAATCCGTCGTCAACGTCGTCGTCTGCAGCTACCAAAACTCGACCGAATCCTCACCCCCACCCCCGTCCCCCATCGTGACTGCAACCATCAACTCTTTGATCCAAGAACTCATTATGGCTGCTTCCTCTATGTTGTTCACATCTCAACAATTGAATAACCTCATCGTAAATTCCTCCCATAGCGTCGTCGACAACGAACTCAATGGTCAACAACACCACCACCGGGAAGGTCTCGTTGACGACAACCACCGATCGACCACCCTTTTCAACATGGCTAACGACCACTACAATCACAATTGGTACAACACAACAACTTATAACAATAGCAGCAGCAACAACAACAGTAGTACTAAAATTGAAGAGACGAGAACGACGATGACAACATCACAGGATCATCGAATTTCGATCGATATTATCGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTATTGCCAAATTTGCGGGAAAGGATTCAAGCGGGATGCAAATCTTAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCGACCGGGGCTTTGAGCAACCCGGAGAAGAGCCATGGAAGGGATTTGAAGATAAGTAAGATGGGGACCAAATATTCATGTCCACAAGAGGGTTGCAGATGGAACCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCATTGCCCCAAAATGTATGTGTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACTCATGAGAAGCACTGTGGGGATGTGAAATGGCTGTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGCCGAATTGTTTGTCGGGCACGCCCCAGTCATAGGTTCATCGACAAAATATTCGAGAAATTTGTGA 1071 45.28 MLHLPSQHPLVSSSNDHHETLDHLFPSDSHSTSLLYNLSILKEKLHQIQSVVNVVVCSYQNSTESSPPPPSPIVTATINSLIQELIMAASSMLFTSQQLNNLIVNSSHSVVDNELNGQQHHHREGLVDDNHRSTTLFNMANDHYNHNWYNTTTYNNSSSNNNSSTKIEETRTTMTTSQDHRISIDIIELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKATGALSNPEKSHGRDLKISKMGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHAELFVGHAPVIGSSTKYSRNL 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26497439 26498598 - Tan0012394.1 Tan08g1171 761063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1171 356 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 350 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Tan08g1171 356 Gene3D Classic Zinc Finger 196 224 - -
Tan08g1171 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Tan08g1171 356 Pfam Zinc finger, C2H2 type 200 222 IPR013087 -
Tan08g1171 356 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Tan08g1171 356 SMART c2h2final6 252 285 IPR013087 -
Tan08g1171 356 SMART c2h2final6 290 312 IPR013087 -
Tan08g1171 356 SMART c2h2final6 200 222 IPR013087 -
Tan08g1171 356 SUPERFAMILY beta-beta-alpha zinc fingers 198 225 IPR036236 -
Tan08g1171 356 FunFam Zinc finger protein 574 199 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1851 Tan-Chr3:73998951 Tan08g1171 Tan-Chr8:26497439 2.20E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28144 PF00096 zf-C2H2 9.00E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1171 - - - 0.0