Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1171 | ATGCTCCATCTTCCTTCACAACATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTCCCTTCTGATTCCCATTCAACCTCTCTCCTTTACAACCTCTCAATTTTGAAAGAGAAACTCCACCAAATCCAATCCGTCGTCAACGTCGTCGTCTGCAGCTACCAAAACTCGACCGAATCCTCACCCCCACCCCCGTCCCCCATCGTGACTGCAACCATCAACTCTTTGATCCAAGAACTCATTATGGCTGCTTCCTCTATGTTGTTCACATCTCAACAATTGAATAACCTCATCGTAAATTCCTCCCATAGCGTCGTCGACAACGAACTCAATGGTCAACAACACCACCACCGGGAAGGTCTCGTTGACGACAACCACCGATCGACCACCCTTTTCAACATGGCTAACGACCACTACAATCACAATTGGTACAACACAACAACTTATAACAATAGCAGCAGCAACAACAACAGTAGTACTAAAATTGAAGAGACGAGAACGACGATGACAACATCACAGGATCATCGAATTTCGATCGATATTATCGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTATTGCCAAATTTGCGGGAAAGGATTCAAGCGGGATGCAAATCTTAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCGACCGGGGCTTTGAGCAACCCGGAGAAGAGCCATGGAAGGGATTTGAAGATAAGTAAGATGGGGACCAAATATTCATGTCCACAAGAGGGTTGCAGATGGAACCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCATTGCCCCAAAATGTATGTGTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACTCATGAGAAGCACTGTGGGGATGTGAAATGGCTGTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGCCGAATTGTTTGTCGGGCACGCCCCAGTCATAGGTTCATCGACAAAATATTCGAGAAATTTGTGA | 1071 | 45.28 | MLHLPSQHPLVSSSNDHHETLDHLFPSDSHSTSLLYNLSILKEKLHQIQSVVNVVVCSYQNSTESSPPPPSPIVTATINSLIQELIMAASSMLFTSQQLNNLIVNSSHSVVDNELNGQQHHHREGLVDDNHRSTTLFNMANDHYNHNWYNTTTYNNSSSNNNSSTKIEETRTTMTTSQDHRISIDIIELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKATGALSNPEKSHGRDLKISKMGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHAELFVGHAPVIGSSTKYSRNL | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26497439 | 26498598 | - | Tan0012394.1 | Tan08g1171 | 761063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1171 | 356 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 26 | 350 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
Tan08g1171 | 356 | Gene3D | Classic Zinc Finger | 196 | 224 | - | - | |
Tan08g1171 | 356 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 200 | 227 | IPR013087 | - | |
Tan08g1171 | 356 | Pfam | Zinc finger, C2H2 type | 200 | 222 | IPR013087 | - | |
Tan08g1171 | 356 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 202 | 222 | IPR013087 | - | |
Tan08g1171 | 356 | SMART | c2h2final6 | 252 | 285 | IPR013087 | - | |
Tan08g1171 | 356 | SMART | c2h2final6 | 290 | 312 | IPR013087 | - | |
Tan08g1171 | 356 | SMART | c2h2final6 | 200 | 222 | IPR013087 | - | |
Tan08g1171 | 356 | SUPERFAMILY | beta-beta-alpha zinc fingers | 198 | 225 | IPR036236 | - | |
Tan08g1171 | 356 | FunFam | Zinc finger protein 574 | 199 | 224 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1851 | Tan-Chr3:73998951 | Tan08g1171 | Tan-Chr8:26497439 | 2.20E-58 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28144 | PF00096 | zf-C2H2 | 9.00E-05 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1171 | - | - | - | 0.0 |