Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1178 ATGGCCATGGCTATGGCCCATCACAGAGAGAGTAGCGATGGGGGTATCAATGGCCACCTTGACAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTCTATGCGGAATGTCCTAAACCGAGCTCTTTGCGCCGCCAGCAGCTGGTTCGTGACTGTCCCATTTTGGCCAACATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGTTTACAGTCATTGAATAGTAAATTGACAGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAACAAGTGTCTCAGCTTGTTTGTGAAAATGGGTATATGCGGCAACACTTGCAAACTGCTAATGCACCAGCAGCAACAACTACTGATGCAAGTTGTGACTCAGTGGCTACTACCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAAGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTCAGTTTAGAGCCCATGAAGATTGCAGAGATTCTAAAAGATCGTCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACCATGTTTCCCACTGGTAATGGTGGGACCATCGAACTTGTTTATACGCAGGTTTATGCTCCTACTACATTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACCAAAACTTTGGAAAATGGCAATCTTGTGGTTTGTGAGAGATCGTTGTCCGGATCTGGCACTGGGCCTAATGCAGCTTCTGCTGCTCAGTTTGTGAGAGCTGAAATGCTACCCAGTGGCTATTTGATTCGTCCGTGCGATGGTGGAGGTTCAATCATCCACATTGTAGATCACCTAAATCTTGAGCCTTGGAGTGTACCAGAGGTAGTACGGCCGCTTTATGAATCGTCAAAGGCTGTTGCCCAGAAAATGACCATAGCAGCTCTTCGCTACATTAGGCAAATCGCTCAAGAGACAAGTGGTGAAGTAGTATACGGTTTAGGCAGGCAACCGGCCGTTCTTCGAACTTTTAGCCAAAGATTGAGCAGAGGATTTAATGATGCTGTCAATGGATTTAATGATGATGGGTGGTCTTTGATCAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATTTAAATACATCATATGATCCAGGCAACTCTCTTGCATTCCATGGGGGGGTCCTTTGTGCAAAAGCTTCCATGCTTCTCCAAAATGTTCCTCCTATTGCTCTAATTCGCTTCTTGAGGGAGCATCGTTCTGAGTGGGCTGATTTCAATGTTGATGCATATTCCGCTGCATCCTTGAAAAGTAATTCGTATGCATACCCGGGCATGAGACCGACTAGGTTTACAGGGAGCCAAATCATCATGCCGCTCGGCCATACAATCGAACAAGAAGAGTTTCTTGAAGTTGTAAGGCTTGAAAGCCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGATGTGTACTGGAATCGATGAGAATGCGGTTGGGGCGTGTTCCGAACTTGTGTTTGCTCCGATTGATGAGATGTTTCCTGATGATGCTGTGCTGCTGCCTTCTGGTTTCAGGATCATCCCATTATATTCTAAAACAGGTGATCCAAAAGATACATGGAACTCAAATAGAACTTTGGATCTCACTTCCAGTCTTGAAGTTGGCTCATCTGCTTCCCAAGATGTTGCTGCATCAACATCTAACTTCAGATCGGTTTTGACCATCGCCTTCCAGTTCCCGTTCGGTGGCAACCTGCAGGATGACGTTGCAGCAATGGGGAGGCAGTATGTTCGGAGTGTTGTTTCAGCCGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGATTAAGCTCGCCGTCAGAACCAAAGCTATCATCTGCTTGTCCAGAAGCTCTTACACTGGCCCGATGGATCTGCCATAGCTACAGATGCCATACTGGAACAGAATTGGTGGCATCAGACAGTGTGGATGGTGACTCAGTTTTGAAACATCTATGGACTCATCAGGATGCAATTCTCTGCTGTTCCCTCAAGTCAATGCCCCCAGTGTTCATGTTTGCAAACCAAGCAGGCCTCGACATGTTGGAGACAACATTGGTTGCCTTACAAGACATCACATTGGATAAGATTCTCGGCGACTCTGCCCGCAAGACTTTCTCTGCCGATTTTTCCAACTTAATGCACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCGACAATGGGACGCCATGCTTCCTTTGAACAAGCCGTTGCATGGAAGGTTCTTGCAGAAGATGAGTCTACCGTTCACTGTCTCGCCTTCTCCTTTGTCAACTGGGGAAATTTCTGA 2538 47.44 MAMAMAHHRESSDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTANAPAATTTDASCDSVATTPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPMKIAEILKDRPSWFRDCRSLEVFTMFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLVVCERSLSGSGTGPNAASAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVVRPLYESSKAVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPGNSLAFHGGVLCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKSNSYAYPGMRPTRFTGSQIIMPLGHTIEQEEFLEVVRLESHPLAQEDAFMSRDVHLLQMCTGIDENAVGACSELVFAPIDEMFPDDAVLLPSGFRIIPLYSKTGDPKDTWNSNRTLDLTSSLEVGSSASQDVAASTSNFRSVLTIAFQFPFGGNLQDDVAAMGRQYVRSVVSAVQRVAVAISPSGLSSPSEPKLSSACPEALTLARWICHSYRCHTGTELVASDSVDGDSVLKHLWTHQDAILCCSLKSMPPVFMFANQAGLDMLETTLVALQDITLDKILGDSARKTFSADFSNLMHQGFAYIPAGICMSTMGRHASFEQAVAWKVLAEDESTVHCLAFSFVNWGNF 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27536019 27542990 + Tan0019473.1 Tan08g1178 761070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1178 845 CDD START_ArGLABRA2_like 161 377 - -
Tan08g1178 845 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Tan08g1178 845 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Tan08g1178 845 Pfam MEKHLA domain 700 842 IPR013978 -
Tan08g1178 845 Gene3D - 19 91 - -
Tan08g1178 845 Pfam START domain 167 375 IPR002913 GO:0008289(InterPro)
Tan08g1178 845 Coils Coil 90 121 - -
Tan08g1178 845 CDD bZIP 77 116 - -
Tan08g1178 845 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Tan08g1178 845 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Tan08g1178 845 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Tan08g1178 845 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Tan08g1178 845 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Tan08g1178 845 SUPERFAMILY Bet v1-like 166 378 - -
Tan08g1178 845 Gene3D - 202 383 IPR023393 -
Tan08g1178 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 842 IPR044830 GO:0003700(InterPro)
Tan08g1178 845 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0250 Tan-Chr5:1908925 Tan08g1178 Tan-Chr8:27536019 0.00E+00 dispersed
Tan05g0251 Tan-Chr5:1908925 Tan08g1178 Tan-Chr8:27536019 0.00E+00 dispersed
Tan06g0255 Tan-Chr6:2072907 Tan08g1178 Tan-Chr8:27536019 0.00E+00 dispersed
Tan06g0256 Tan-Chr6:2072907 Tan08g1178 Tan-Chr8:27536019 0.00E+00 dispersed
Tan08g1178 Tan-Chr8:27536019 Tan03g2779 Tan-Chr3:80801218 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28145 PF01852 START 1.50E-47 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1178 K09338 - rcu:8266275 1373.61