Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1184 ATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACAGCTCCCACACCAACCCTCCGACCAACCTCATGGCGGCGCCGCTGCCCCCTTCACTTCCGACGACATCTCCGGCTCCGCCGTCTGCTTTGACAACATTCCCTCTTCCTATGGCGTCTATGAAACCTTCAACCGCAATAATCACTCTCAAGATTGGAGTAATATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCCTTAATCGAAACCCAGCACCAACCGAAGCTTGAAAATTTCCTCGGCCATCACTCTTTTACCGACCACGATCACGCCACCGCCGCCGTCGTGTACACCAATGCATCTAGCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGATCAGGCAAGCTGCGGCGGCGGTGGAAAAGCCAACGCCGGCAACAGCAACGGCAACGGCAACAACAGTAGTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAATCAACCGGCACCGCTGCAAGCGGTGGCAAAGAGCGGCGGAGATCACGACGGTGCGGTTAGATCAGCTAATATCACAAACGCACATGGTTTATCGCTGTCGATGAACACCGGGCCACCGCCGCCGTCGCAGTCCTCTCGCTCAGTGGCTCTGCCACTTCTCACGGCAAACGGCGGCGAAAGCTCCTCCTCCGATAACAAACATCCCAAATCGGCGGCTGCAGAACTGGACGCTGAAAACGGTGCCGTTGAAGCTGTCCCGAGAAAATCTGTCGACACATTCGGCCAAAGAACTTCCATTTACCGCGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACAACCACAACTAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCAGGCAAGAGTTTGTTGCGTCTCTCAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCCATTTACCGTGGAGTAACAAGACACCATCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGGAACAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCAGCAGAGGCATACGACATAGCAGCCATAAAGTTCCGTGGACTAAATGCAGTGACCAACTTTGACATGAGCCGTTACGACGTCAAAGCCATTCTCGAAAGCAACACATTACCCATCGGTGGCGCTGCGAAGCGCCTAAAGGACATCGATCACTCCGACATCCCCCTCGACACACAACGAAGCGACGACAACATGACTTCCCACCTCTCTGATGGAATAATCACCACCACCACCACCCCTTACGGCGGTGGTGGATGGCCTACTCTCGCCTTCCACCACCACCACCCCTATGCCTTCCATTACCCCTATACTGCCCCACAGCAACGGCTGTGGTGCAAGCAAGAGCACGATGCCACCGTCACTGCTGCAGACAACTTCTTCCCACAGGGCGGGACCATGGACTCAATGGATCACAGCTCCGGGTCGAGCTCTGTGGTTTACAGCGGTGGCAGTGGAGACGGGTACGGTGGAAACTTCTTGATTCCGATGGGGGCAGAAGGGAGCAGCAGCAACAACAACAATAGTGGATTGGGAGACATTGGAGAAGTGAATTTGTTTGGTTGTTCTTCTGATGTGGATGACCCTTATCATGCATCAAGGACGACCAATTTGTATAATTATCATAATTCCTCTCATCAGCTGCAACCACCCGCCGCGGCAGCGGTGGCGGCGCTGCAAGGCTCCGCCTGCAACAACTGGCTTCCACCTGCTAGGTCGGTTTGTCACGGCGGAGCTCCGCCGCCGTTCACCATTTGGAATGACACTTAA 1983 52.04 MGSMNWLGFSLSPQEQQLPHQPSDQPHGGAAAPFTSDDISGSAVCFDNIPSSYGVYETFNRNNHSQDWSNMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHATAAVVYTNASSNYMFQNCSLELPSDQASCGGGGKANAGNSNGNGNNSSSSIGLSMIKTWLRNQPAPLQAVAKSGGDHDGAVRSANITNAHGLSLSMNTGPPPPSQSSRSVALPLLTANGGESSSSDNKHPKSAAAELDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDTQRSDDNMTSHLSDGIITTTTTPYGGGGWPTLAFHHHHPYAFHYPYTAPQQRLWCKQEHDATVTAADNFFPQGGTMDSMDHSSGSSSVVYSGGSGDGYGGNFLIPMGAEGSSSNNNNSGLGDIGEVNLFGCSSDVDDPYHASRTTNLYNYHNSSHQLQPPAAAAVAALQGSACNNWLPPARSVCHGGAPPPFTIWNDT 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28966042 28970465 + Tan0015354.1 Tan08g1184 761076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1184 660 FunFam AP2-like ethylene-responsive transcription factor ANT 269 335 - -
Tan08g1184 660 SUPERFAMILY DNA-binding domain 269 335 IPR016177 GO:0003677(InterPro)
Tan08g1184 660 FunFam AP2-like ethylene-responsive transcription factor 368 429 - -
Tan08g1184 660 Gene3D AP2/ERF domain 369 429 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 Gene3D AP2/ERF domain 270 335 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 MobiDBLite consensus disorder prediction 225 246 - -
Tan08g1184 660 MobiDBLite consensus disorder prediction 225 239 - -
Tan08g1184 660 SMART rav1_2 369 433 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 SMART rav1_2 270 339 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 SUPERFAMILY DNA-binding domain 368 429 IPR016177 GO:0003677(InterPro)
Tan08g1184 660 PRINTS Ethylene responsive element binding protein signature 271 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 PRINTS Ethylene responsive element binding protein signature 409 429 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 MobiDBLite consensus disorder prediction 13 34 - -
Tan08g1184 660 CDD AP2 269 335 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 191 467 - -
Tan08g1184 660 ProSiteProfiles AP2/ERF domain profile. 369 427 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 MobiDBLite consensus disorder prediction 142 158 - -
Tan08g1184 660 MobiDBLite consensus disorder prediction 136 158 - -
Tan08g1184 660 ProSiteProfiles AP2/ERF domain profile. 270 333 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 CDD AP2 368 429 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1184 660 Pfam AP2 domain 370 419 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2797 Tan-Chr4:87505443 Tan08g1184 Tan-Chr8:28966042 4.60E-97 dispersed
Tan08g1184 Tan-Chr8:28966042 Tan09g1597 Tan-Chr9:67738656 1.90E-68 dispersed
Tan01g1481 Tan-Chr1:15019160 Tan08g1184 Tan-Chr8:28966042 1.30E-98 transposed
Tan01g2821 Tan-Chr1:57040634 Tan08g1184 Tan-Chr8:28966042 2.10E-68 transposed
Tan07g0731 Tan-Chr7:11708920 Tan08g1184 Tan-Chr8:28966042 1.30E-105 transposed
Tan07g1256 Tan-Chr7:56439284 Tan08g1184 Tan-Chr8:28966042 6.50E-66 transposed
Tan09g1693 Tan-Chr9:68529824 Tan08g1184 Tan-Chr8:28966042 5.60E-99 transposed
Tan11g1931 Tan-Chr11:29672929 Tan08g1184 Tan-Chr8:28966042 1.10E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28146 PF00847 AP2 3.50E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1184 K09285 - csv:101219473 1000.35