Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1189 | ATGGACAATGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGACGACAAAAAGAAGTACTTGCGCTATTTTGTTCGATCCTACGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATTGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTATTTATTTATTGATTTCAGGATCTTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACGCCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTCGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTACAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAGTGCGCAGAAAAGGAGTTGCAAGTTTACCTAAATGGTGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCGAAAAGTACTGGTGGCTGTCGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTGGTGGTTCAAGTCGAACCGTTGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA | 1212 | 43.73 | MDNGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYLRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNYLFIDFRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNGDGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRAGGSSRTVDDTDHWSCEHCTFANVKSATFCQMCQQRR | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29875463 | 29921402 | + | Tan0020449.1 | Tan08g1189 | 761081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1189 | 403 | ProSitePatterns | Zinc finger RanBP2-type signature. | 380 | 399 | IPR001876 | - | |
Tan08g1189 | 403 | SMART | zf_4 | 378 | 402 | IPR001876 | - | |
Tan08g1189 | 403 | MobiDBLite | consensus disorder prediction | 342 | 376 | - | - | |
Tan08g1189 | 403 | Gene3D | - | 374 | 403 | - | - | |
Tan08g1189 | 403 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 162 | IPR044066 | - | |
Tan08g1189 | 403 | SUPERFAMILY | RING/U-box | 4 | 54 | - | - | |
Tan08g1189 | 403 | Pfam | Ariadne domain | 171 | 335 | IPR045840 | - | |
Tan08g1189 | 403 | CDD | Rcat_RBR_ARI7-like | 107 | 161 | - | - | |
Tan08g1189 | 403 | SUPERFAMILY | RING/U-box | 46 | 98 | - | - | |
Tan08g1189 | 403 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 376 | 403 | IPR001876 | - | |
Tan08g1189 | 403 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 5 | 234 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Tan08g1189 | 403 | Pfam | IBR domain, a half RING-finger domain | 45 | 96 | IPR002867 | GO:0008270(InterPro) | |
Tan08g1189 | 403 | SUPERFAMILY | Ran binding protein zinc finger-like | 376 | 403 | IPR036443 | - | |
Tan08g1189 | 403 | SMART | ibrneu5 | 97 | 158 | IPR002867 | GO:0008270(InterPro) | |
Tan08g1189 | 403 | SMART | ibrneu5 | 45 | 96 | IPR002867 | GO:0008270(InterPro) | |
Tan08g1189 | 403 | FunFam | RBR-type E3 ubiquitin transferase | 99 | 335 | - | - | |
Tan08g1189 | 403 | Gene3D | - | 102 | 335 | - | - | |
Tan08g1189 | 403 | Pfam | IBR domain | 106 | 146 | - | - | |
Tan08g1189 | 403 | SUPERFAMILY | RING/U-box | 104 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1608 | Tan-Chr6:26454883 | Tan08g1189 | Tan-Chr8:29875463 | 5.70E-186 | dispersed | |
Tan06g1609 | Tan-Chr6:26454883 | Tan08g1189 | Tan-Chr8:29875463 | 1.50E-158 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1189 | K11968 | - | csv:101218052 | 799.66 |