Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1189 ATGGACAATGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGACGACAAAAAGAAGTACTTGCGCTATTTTGTTCGATCCTACGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATTGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTATTTATTTATTGATTTCAGGATCTTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACGCCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTCGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTACAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAGTGCGCAGAAAAGGAGTTGCAAGTTTACCTAAATGGTGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCGAAAAGTACTGGTGGCTGTCGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTGGTGGTTCAAGTCGAACCGTTGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA 1212 43.73 MDNGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYLRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNYLFIDFRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNGDGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRAGGSSRTVDDTDHWSCEHCTFANVKSATFCQMCQQRR 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29875463 29921402 + Tan0020449.1 Tan08g1189 761081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1189 403 ProSitePatterns Zinc finger RanBP2-type signature. 380 399 IPR001876 -
Tan08g1189 403 SMART zf_4 378 402 IPR001876 -
Tan08g1189 403 MobiDBLite consensus disorder prediction 342 376 - -
Tan08g1189 403 Gene3D - 374 403 - -
Tan08g1189 403 ProSiteProfiles TRIAD supradomain profile. 1 162 IPR044066 -
Tan08g1189 403 SUPERFAMILY RING/U-box 4 54 - -
Tan08g1189 403 Pfam Ariadne domain 171 335 IPR045840 -
Tan08g1189 403 CDD Rcat_RBR_ARI7-like 107 161 - -
Tan08g1189 403 SUPERFAMILY RING/U-box 46 98 - -
Tan08g1189 403 ProSiteProfiles Zinc finger RanBP2 type profile. 376 403 IPR001876 -
Tan08g1189 403 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 234 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Tan08g1189 403 Pfam IBR domain, a half RING-finger domain 45 96 IPR002867 GO:0008270(InterPro)
Tan08g1189 403 SUPERFAMILY Ran binding protein zinc finger-like 376 403 IPR036443 -
Tan08g1189 403 SMART ibrneu5 97 158 IPR002867 GO:0008270(InterPro)
Tan08g1189 403 SMART ibrneu5 45 96 IPR002867 GO:0008270(InterPro)
Tan08g1189 403 FunFam RBR-type E3 ubiquitin transferase 99 335 - -
Tan08g1189 403 Gene3D - 102 335 - -
Tan08g1189 403 Pfam IBR domain 106 146 - -
Tan08g1189 403 SUPERFAMILY RING/U-box 104 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1189 K11968 - - csv:101218052 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1608 Tan-Chr6:26454883 Tan08g1189 Tan-Chr8:29875463 5.70E-186 dispersed
Tan06g1609 Tan-Chr6:26454883 Tan08g1189 Tan-Chr8:29875463 1.50E-158 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g1343 . 164 589 ARIADNE family AT4G34370 71.7 1.9e-183 639.4
Tan05g1345 . 164 593 ARIADNE family AT4G34370 71.1 4.8e-182 634.8
Tan05g1346 . 164 543 ARIADNE family AT4G34370 77.1 4.2e-178 621.7
Tan05g1347 . 164 543 ARIADNE family AT4G34370 77.1 4.2e-178 621.7
Tan05g1344 . 164 542 ARIADNE family AT4G34370 77.0 2.1e-177 619.4
Tan05g1345 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1346 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1347 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1343 . 58 542 ARIADNE family AT2G16090 76.8 5.7e-224 774.2
Tan05g1344 . 58 542 ARIADNE family AT2G16090 76.8 5.7e-224 774.2
Tan05g1343 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1345 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1346 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1347 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1344 . 38 522 ARIADNE family AT3G27710 62.7 3.5e-182 635.6
Tan05g1343 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1344 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1345 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1346 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1347 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan06g1608 . 56 530 ARIADNE family AT1G05890 74.5 1.2e-220 763.5
Tan06g1609 . 56 496 ARIADNE family AT1G05890 75.3 1.6e-207 719.9
Tan08g1189 . 4 348 ARIADNE family AT1G05890 70.1 1.4e-155 547.4
Tan06g1608 . 53 584 ARIADNE family AT1G65430 71.2 3.5e-241 831.6
Tan06g1609 . 53 496 ARIADNE family AT1G65430 75.9 6.0e-217 751.1
Tan08g1189 . 3 403 ARIADNE family AT1G65430 73.3 1.6e-185 646.7
Tan06g1608 . 53 449 ARIADNE family AT2G31780 57.6 5.9e-143 505.0
Tan06g1609 . 53 449 ARIADNE family AT2G31780 57.6 5.9e-143 505.0
Tan08g1189 . 4 267 ARIADNE family AT2G31780 54.2 8.3e-89 325.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72