Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1189 ATGGACAATGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGACGACAAAAAGAAGTACTTGCGCTATTTTGTTCGATCCTACGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATTGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTATTTATTTATTGATTTCAGGATCTTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACGCCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTCGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTACAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAGTGCGCAGAAAAGGAGTTGCAAGTTTACCTAAATGGTGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCGAAAAGTACTGGTGGCTGTCGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTGGTGGTTCAAGTCGAACCGTTGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA 1212 43.73 MDNGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYLRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNYLFIDFRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNGDGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRAGGSSRTVDDTDHWSCEHCTFANVKSATFCQMCQQRR 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29875463 29921402 + Tan0020449.1 Tan08g1189 761081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1189 403 ProSitePatterns Zinc finger RanBP2-type signature. 380 399 IPR001876 -
Tan08g1189 403 SMART zf_4 378 402 IPR001876 -
Tan08g1189 403 MobiDBLite consensus disorder prediction 342 376 - -
Tan08g1189 403 Gene3D - 374 403 - -
Tan08g1189 403 ProSiteProfiles TRIAD supradomain profile. 1 162 IPR044066 -
Tan08g1189 403 SUPERFAMILY RING/U-box 4 54 - -
Tan08g1189 403 Pfam Ariadne domain 171 335 IPR045840 -
Tan08g1189 403 CDD Rcat_RBR_ARI7-like 107 161 - -
Tan08g1189 403 SUPERFAMILY RING/U-box 46 98 - -
Tan08g1189 403 ProSiteProfiles Zinc finger RanBP2 type profile. 376 403 IPR001876 -
Tan08g1189 403 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 234 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Tan08g1189 403 Pfam IBR domain, a half RING-finger domain 45 96 IPR002867 GO:0008270(InterPro)
Tan08g1189 403 SUPERFAMILY Ran binding protein zinc finger-like 376 403 IPR036443 -
Tan08g1189 403 SMART ibrneu5 97 158 IPR002867 GO:0008270(InterPro)
Tan08g1189 403 SMART ibrneu5 45 96 IPR002867 GO:0008270(InterPro)
Tan08g1189 403 FunFam RBR-type E3 ubiquitin transferase 99 335 - -
Tan08g1189 403 Gene3D - 102 335 - -
Tan08g1189 403 Pfam IBR domain 106 146 - -
Tan08g1189 403 SUPERFAMILY RING/U-box 104 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1608 Tan-Chr6:26454883 Tan08g1189 Tan-Chr8:29875463 5.70E-186 dispersed
Tan06g1609 Tan-Chr6:26454883 Tan08g1189 Tan-Chr8:29875463 1.50E-158 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1189 K11968 - csv:101218052 799.66