Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1211 ATGGGTTTGAGAAATCACATGGCAGAAGATCAAAACATCTTCTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTTCTTCTTCTACTTCTTTTTCTTTCTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTTCCTCCGACCGAGATTTGATCTCTCGAACCGTCCAATGTGTTTCGGGGTTAATTCCTGAACATGAACTTTTCGCGTCCCGTTGCCTGCCTCTGTTCACGGAGAGCAAGGCCGAGGCGAAGAAGGACGAAGAAGAAGAAGAGGGTCGAGTTCGAGATCATGAAAGGCAATATTTTGGAATGAAAGAGGAGGATGAAGATAGGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAGTCTCTAATTTGGGTGATGGGAACATGAATAATGTTTGTGTAAAGAAAGAAGAAATTAGCAGCGTGAAGAAAAACTTCTCTAATTTTAACACTCAAGGAAGGTTTTGGATCCCAACGCCGGCTCAGATCCTTGTCGGTCCCATGCAATTTGCTTGCTCCATCTGCAACAAATCTTTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCACGGATCGGAGTACCGAAAAGGACCAGAATCCCTGAGAGGAACACAGCCAGCAGCAATGCTGAGGCTTCCATGTTATTGCTGCGCTCAGGGGTGCAAGAACAACATCAACCATCCAAGAGCAAAGCCATTGAAGGACTTCAGAACCCTTCAAACCCACTATAAAAGAAAGCATGGTTCTAAGCCTTTTATGTGCAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGCGAACCCACGAAAAAAATTGTGGGAAGCTTTGGTATTGCAGCTGTGGCTCTGATTTTAAACACAAACGATCCCTTAAAGATCACATCACTTCCTTTGGCAAAGGCCACTCCCCTCGCCATGCCTTTCATGATCACAAACAATGCCTCTCTACTGCCTCTGAAGAAGAATGA 1011 44.71 MGLRNHMAEDQNIFCLQSPTFIEWLKPHNPSSSSSTSFSFSPSISLSSSSSSSSDRDLISRTVQCVSGLIPEHELFASRCLPLFTESKAEAKKDEEEEEGRVRDHERQYFGMKEEDEDREKVEVGLHIGLPVSNLGDGNMNNVCVKKEEISSVKKNFSNFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHITSFGKGHSPRHAFHDHKQCLSTASEEE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32551763 32554068 - Tan0019990.1 Tan08g1211 761103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1211 336 Coils Coil 88 108 - -
Tan08g1211 336 Gene3D Classic Zinc Finger 224 314 - -
Tan08g1211 336 FunFam Zinc finger protein WIP2 234 316 - -
Tan08g1211 336 SUPERFAMILY beta-beta-alpha zinc fingers 172 204 IPR036236 -
Tan08g1211 336 PANTHER ZINC FINGER PROTEIN WIP2 19 325 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Tan08g1211 336 Gene3D Classic Zinc Finger 180 203 - -
Tan08g1211 336 SMART c2h2final6 181 203 IPR013087 -
Tan08g1211 336 SMART c2h2final6 265 285 IPR013087 -
Tan08g1211 336 SMART c2h2final6 228 260 IPR013087 -
Tan08g1211 336 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 264 288 - -
Tan08g1211 336 SUPERFAMILY beta-beta-alpha zinc fingers 250 285 IPR036236 -
Tan08g1211 336 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Tan08g1211 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0567 Tan-Chr6:4335233 Tan08g1211 Tan-Chr8:32551763 2.20E-82 dispersed
Tan08g1211 Tan-Chr8:32551763 Tan11g1929 Tan-Chr11:29393639 1.20E-84 dispersed
Tan04g1769 Tan-Chr4:49292463 Tan08g1211 Tan-Chr8:32551763 9.30E-17 wgd
Tan04g1769 Tan-Chr4:49292463 Tan08g1211 Tan-Chr8:32551763 9.30E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28147 PF13912 zf-C2H2_6 6.80E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1211 - - - 0.0