Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1252 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAGCTCATTGAAAGACTCCTCAAAACCTCCTCCTATCAAGTTACTACTGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTCGGTTTCGTTGAAGAACATCAACATCCAAACTTTAAACCCCCTTCTTCTTCTCCTTCCTCCAACAATCATCATCAGGAGCTGGAAGTGAATCTTATCATTACTGATTACTGCATGCCTGGAATGACAGGTTTCGATTTGCTTAAGAAAGTGAAGGAATCGACGTCTCTTAGAAACATACCAGTAGTGATAATGTCATCCGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGAGCGGAAGAGTTCTTCCTGAAGCCGGTTCGATTGTGCGATGTGAATAAACTAAAGCCGCACATGATGAAGACGAAATTGAAGGATCAAAATCAAGAAGAAGAAGAAGAAGAAACAACAGAGAAGGAATTGGAATCGGTAGAAAAACAAGAAGAAGAGTTGCAGATGAACAGTAACAAGAGAAAGGCGTTGGCTATGGAGGAAGGTGTGGGGGAGGAGAGAAGAAGAAGAAGGTACAACAACAATGGCGTCGCGACTGTGATTTGA 648 42.59 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGFVEEHQHPNFKPPSSSPSSNNHHQELEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLKDQNQEEEEEETTEKELESVEKQEEELQMNSNKRKALAMEEGVGEERRRRRYNNNGVATVI 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38118784 38120409 - Tan0000313.1 Tan08g1252 761144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1252 215 ProSiteProfiles Response regulatory domain profile. 10 150 IPR001789 GO:0000160(InterPro)
Tan08g1252 215 SUPERFAMILY CheY-like 8 144 IPR011006 -
Tan08g1252 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 184 IPR045279 GO:0009736(InterPro)
Tan08g1252 215 MobiDBLite consensus disorder prediction 170 185 - -
Tan08g1252 215 Gene3D - 10 214 - -
Tan08g1252 215 SMART REC_2 9 145 IPR001789 GO:0000160(InterPro)
Tan08g1252 215 Coils Coil 151 194 - -
Tan08g1252 215 CDD REC_typeA_ARR 11 145 - -
Tan08g1252 215 Pfam Response regulator receiver domain 68 139 IPR001789 GO:0000160(InterPro)
Tan08g1252 215 MobiDBLite consensus disorder prediction 151 215 - -
Tan08g1252 215 MobiDBLite consensus disorder prediction 192 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0466 Tan-Chr3:56768163 Tan08g1252 Tan-Chr8:38118784 7.60E-61 dispersed
Tan04g0532 Tan-Chr4:4565364 Tan08g1252 Tan-Chr8:38118784 1.20E-54 dispersed
Tan04g1168 Tan-Chr4:10930635 Tan08g1252 Tan-Chr8:38118784 2.00E-38 dispersed
Tan04g1444 Tan-Chr4:16954915 Tan08g1252 Tan-Chr8:38118784 6.90E-42 dispersed
Tan08g1252 Tan-Chr8:38118784 Tan11g1593 Tan-Chr11:14982887 1.00E-47 dispersed
Tan08g1252 Tan-Chr8:38118784 Tan09g2194 Tan-Chr9:71968697 1.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28148 PF00072 Response_reg 1.50E-17 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1252 K14492 - csv:101220810 298.901