Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1277 | ATGTTTTTCTTTGAATTCTATGAGTCTCCAAACCTTGCGGAGAAATTGCATGCCGAAGAATGGAGTCCAAGTATCAATCAGGTGCTCATGATCACTCTAGAGATAGCGAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTACGTCCGTCCTTGGCTGATTTTGGTTTAGCAGTACACCGGAAATATCTGAAAGGAATATCTGCAGAAAACTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACCCTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACTTATCAGATGTCTACAGTTTTGGCATCTTAATTAATGAGCTTTTGACTGGTGTTGTTCCGTATACTGATCTTCGTACTGAAGCACAGGCCCACACTGTACTTGAAATGAATTATACAGAGCAGCTGCTTACCGCAGCCATTGTTTCAGATGGCTTGCGGCCTGCTCTTCCTAGTGATGAGTCTGGCACACCGTCAAGGTTGTTGTCACTTATACGGAGGTGCTGGGATGCAAATCCTAAAAATAGACCATCTTTTTCTGATATAGTTATGGACTTGGGGTCAATTTGGGAGGACAGAAAGGGTTTAGAATCTGTCACCCCCATACATCCCGATTTGTGTGGTAGTTTTAGTGATGCTAATGAAAAGGATTATGGATATCGAGAAGATATTAATTGGTCAAATCAGGGTGAACAATTTTCTCGAAAGGCTTCTGATGCAAACAGGTGTGCTGTGAATGTTTGGGTTGATTCCTCAACTGATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCCTCACATGTGCAATGAAGAAGACGTCCATGTCTATGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGGTTCTTGCGAACATCAAGTTCCACAAGAAGTCCTGCGGATGCATTAATGGAAGCATTTGTAAAAACAGATATTGAGTTTAGAAAAGAATTTGATATTTTTCGCAAATCCAAGAAGGTTAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTAAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACGATATTGTGTCGGGATGGTGATCCCATCGTTTTAAGTAAGGATCATGTCGCCAGTTGTCCTGAGGAGAGAGAGCGTGTCGTCAGAGCTGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTGAAGCCAGCTGTGACTGCAGAACCCGAGATTACAGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGACTATGGGATGCCCTCAGCAACTCTGAGGTAGTTGGTATCATCAGAGACACTGTGAAAGAACCGGGAATGTGCTCGAAGCGACTTGCAACGGAAGCTGCAGCTCGTGGCAGCAACGATAACATCACGGTAATTGTTGTATTTTTGCATCCAGTATCTACAGTAGAGAGAATTTATTGA | 1674 | 43.85 | MFFFEFYESPNLAEKLHAEEWSPSINQVLMITLEIAKALQYLHNLGIVHRDVKPANVLLDKDLRPSLADFGLAVHRKYLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILINELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPSDESGTPSRLLSLIRRCWDANPKNRPSFSDIVMDLGSIWEDRKGLESVTPIHPDLCGSFSDANEKDYGYREDINWSNQGEQFSRKASDANRCAVNVWVDSSTDHLAYRPILSWGSFSTCGRRETMEDSHFLLPHMCNEEDVHVYGIFDGHRGAAAAEFSAQAIPGFLRTSSSTRSPADALMEAFVKTDIEFRKEFDIFRKSKKVKQKDWHPGCTAVVALIVRDRLFVANAGDCRTILCRDGDPIVLSKDHVASCPEERERVVRAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLTSQDDYLVMASDGLWDALSNSEVVGIIRDTVKEPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY | 557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 42487673 | 42522211 | - | Tan0017469.2 | Tan08g1277 | 761169 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1277 | 557 | SUPERFAMILY | PP2C-like | 283 | 549 | IPR036457 | - | |
Tan08g1277 | 557 | Pfam | Protein kinase domain | 2 | 210 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g1277 | 557 | SMART | PP2C_SIG_2 | 305 | 547 | IPR001932 | - | |
Tan08g1277 | 557 | Gene3D | - | 280 | 552 | IPR036457 | - | |
Tan08g1277 | 557 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 47 | 59 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan08g1277 | 557 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 227 | - | - | |
Tan08g1277 | 557 | SMART | PP2C_4 | 280 | 545 | IPR001932 | - | |
Tan08g1277 | 557 | ProSiteProfiles | PPM-type phosphatase domain profile. | 290 | 547 | IPR001932 | - | |
Tan08g1277 | 557 | ProSiteProfiles | Protein kinase domain profile. | 1 | 233 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g1277 | 557 | CDD | PP2Cc | 292 | 547 | IPR001932 | - | |
Tan08g1277 | 557 | SMART | serkin_6 | 2 | 216 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g1277 | 557 | PANTHER | PROTEIN PHOSPHATASE | 259 | 546 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Tan08g1277 | 557 | Pfam | Protein phosphatase 2C | 294 | 540 | IPR001932 | - | |
Tan08g1277 | 557 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 231 | IPR011009 | - | |
Tan08g1277 | 557 | FunFam | Leucine rich repeat protein phosphatase 2c domain containing protein | 281 | 551 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0349 | Tan-Chr8:3108855 | Tan08g1277 | Tan-Chr8:42487673 | 5.40E-36 | dispersed | |
Tan08g1277 | Tan-Chr8:42487673 | Tan11g1206 | Tan-Chr11:9994268 | 6.40E-38 | dispersed | |
Tan08g1276 | Tan-Chr8:42487673 | Tan08g1277 | Tan-Chr8:42487673 | 0.00E+00 | tandem | |
Tan08g1277 | Tan-Chr8:42487673 | Tan08g1278 | Tan-Chr8:42487673 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67947 | PF00481 | PP2C | 7.00E-67 | CL0238 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1277 | - | - | - | 0.0 |