Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1278 ATGGTCTGGCATGTCTCTCTTTGGAGTTCCTCCAAATTTTTTTCGAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTACGTCCGTCCTTGGCTGATTTTGGTTTAGCAGTACACCGGAAATATCTGAAAGGAATATCTGCAGAAAACTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACCCTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACTTATCAGATGTCTACAGTTTTGGCATCTTAATTAATGAGCTTTTGACTGGTGTTGTTCCGTATACTGATCTTCGTACTGAAGCACAGGCCCACACTGTACTTGAAATGAATTATACAGAGCAGCTGCTTACCGCAGCCATTGTTTCAGATGGCTTGCGGCCTGCTCTTCCTAGTGATGAGTCTGGCACACCGTCAAGGTTGTTGTCACTTATACGGAGGTGCTGGGATGCAAATCCTAAAAATAGACCATCTTTTTCTGATATAGTTATGGACTTGGGGTCAATTTGGGAGGACAGAAAGGGTTTAGAATCTGTCACCCCCATACATCCCGATTTGTGTGGTAGTTTTAGTGATGCTAATGAAAAGGATTATGGATATCGAGAAGATATTAATTGGTCAAATCAGGGTGAACAATTTTCTCGAAAGGCTTCTGATGCAAACAGGTGTGCTGTGAATGTTTGGGTTGATTCCTCAACTGATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCCTCACATGTGCAATGAAGAAGACGTCCATGTCTATGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGGTTCTTGCGAACATCAAGTTCCACAAGAAGTCCTGCGGATGCATTAATGGAAGCATTTGTAAAAACAGATATTGAGTTTAGAAAAGAATTTGATATTTTTCGCAAATCCAAGAAGGTTAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTAAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACGATATTGTGTCGGGATGGTGATCCCATCGTTTTAAGTAAGGATCATGTCGCCAGTTGTCCTGAGGAGAGAGAGCGTGTCGTCAGAGCTGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTGAAGCCAGCTGTGACTGCAGAACCCGAGATTACAGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGACTATGGGATGCCCTCAGCAACTCTGAGGTAGTTGGTATCATCAGAGACACTGTGAAAGAACCGGGAATGTGCTCGAAGCGACTTGCAACGGAAGCTGCAGCTCGTGGCAGCAACGATAACATCACGGTAATTGTTGTATTTTTGCATCCAGTATCTACAGTAGAGAGAATTTATTGA 1611 43.95 MVWHVSLWSSSKFFSKALQYLHNLGIVHRDVKPANVLLDKDLRPSLADFGLAVHRKYLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILINELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPSDESGTPSRLLSLIRRCWDANPKNRPSFSDIVMDLGSIWEDRKGLESVTPIHPDLCGSFSDANEKDYGYREDINWSNQGEQFSRKASDANRCAVNVWVDSSTDHLAYRPILSWGSFSTCGRRETMEDSHFLLPHMCNEEDVHVYGIFDGHRGAAAAEFSAQAIPGFLRTSSSTRSPADALMEAFVKTDIEFRKEFDIFRKSKKVKQKDWHPGCTAVVALIVRDRLFVANAGDCRTILCRDGDPIVLSKDHVASCPEERERVVRAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLTSQDDYLVMASDGLWDALSNSEVVGIIRDTVKEPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42487673 42521444 - Tan0017469.3 Tan08g1278 761170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1278 536 Gene3D Transferase(Phosphotransferase) domain 1 13 206 - -
Tan08g1278 536 CDD PP2Cc 271 526 IPR001932 -
Tan08g1278 536 SUPERFAMILY Protein kinase-like (PK-like) 16 210 IPR011009 -
Tan08g1278 536 SMART PP2C_SIG_2 284 526 IPR001932 -
Tan08g1278 536 ProSiteProfiles PPM-type phosphatase domain profile. 269 526 IPR001932 -
Tan08g1278 536 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 260 530 - -
Tan08g1278 536 Pfam Protein kinase domain 15 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g1278 536 SMART PP2C_4 259 524 IPR001932 -
Tan08g1278 536 SUPERFAMILY PP2C-like 262 528 IPR036457 -
Tan08g1278 536 Pfam Protein phosphatase 2C 273 519 IPR001932 -
Tan08g1278 536 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g1278 536 Gene3D - 259 531 IPR036457 -
Tan08g1278 536 PANTHER PROTEIN PHOSPHATASE 238 525 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan08g1278 536 SMART serkin_6 1 195 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g1278 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 26 38 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1276 Tan-Chr8:42487673 Tan08g1278 Tan-Chr8:42487673 0.00E+00 dispersed
Tan08g1278 Tan-Chr8:42487673 Tan11g1206 Tan-Chr11:9994268 6.20E-38 dispersed
Tan08g1277 Tan-Chr8:42487673 Tan08g1278 Tan-Chr8:42487673 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67948 PF00481 PP2C 6.30E-67 CL0238 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1278 - - - 0.0