Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1295 ATGAAAGAAGATGACACAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCACAAACCCTAATCACCCCTGATCTTGCTTTGGCATTTGACATCAGAAACCCAAATAGTTCCATCATCAACAACAACCACCCTCCGCCGCCGCCGCCGCCTCCACCTCCTCCGGCGGCTACCCAGCCGAGTTCGGCCGATTTTGGGGACTCTGGCGATTTGGGCTCCGGCGCCGTCGGCGTCGACGAACCCGCGCGGACCCTGAAGCGGCCGCGGTTGGTGTGGACTCCACAGCTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGGATAAAAAATGCCGTCCCTAAAACCATAATGCAGCTTATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCCAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGAATTTCCGGCTGCAGCGGCGGCGGAGCTAGCGGTGGCGCTGGATTGGCTTCAGCCGTTTCAGATCCCGCTACCGACCATTTGTTCGCCAGTTCCCCTGTTCCGCCGCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTGCCCGTCGGAGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCCCATTATGGGTCGCCGCCGAATGGGCAGTTTGAGCATCCGTTTATAGCTCGGCCTGTTCACAGAATTGGGACTCCAGTGAATACTCCGGCGACGAATTACGGCGAGGATTTGGATTCCAGTAATGGAACAGGAGGAAGGAAGGTTCTTACTCTTTTCCCCACCGGGAATGATTAA 867 55.94 MKEDDTNWFSKWEEELPSPDELMPLSQTLITPDLALAFDIRNPNSSIINNNHPPPPPPPPPPPAATQPSSADFGDSGDLGSGAVGVDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGCSGGGASGGAGLASAVSDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHYGSPPNGQFEHPFIARPVHRIGTPVNTPATNYGEDLDSSNGTGGRKVLTLFPTGND 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45121274 45122551 + Tan0013975.1 Tan08g1295 761187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1295 288 MobiDBLite consensus disorder prediction 41 88 - -
Tan08g1295 288 Gene3D - 92 154 - -
Tan08g1295 288 MobiDBLite consensus disorder prediction 49 67 - -
Tan08g1295 288 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
Tan08g1295 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Tan08g1295 288 MobiDBLite consensus disorder prediction 259 288 - -
Tan08g1295 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677(InterPro)
Tan08g1295 288 MobiDBLite consensus disorder prediction 1 22 - -
Tan08g1295 288 Pfam Myb-like DNA-binding domain 98 147 IPR001005 -
Tan08g1295 288 SUPERFAMILY Formin homology 2 domain (FH2 domain) 53 63 - -
Tan08g1295 288 FunFam Two-component response regulator 91 154 - -
Tan08g1295 288 MobiDBLite consensus disorder prediction 1 18 - -
Tan08g1295 288 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 227 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0421 Tan-Chr5:2964264 Tan08g1295 Tan-Chr8:45121274 4.20E-28 dispersed
Tan08g1295 Tan-Chr8:45121274 Tan10g1050 Tan-Chr10:9414877 2.40E-20 dispersed
Tan03g0518 Tan-Chr3:59473858 Tan08g1295 Tan-Chr8:45121274 5.60E-105 transposed
Tan11g1867 Tan-Chr11:24114385 Tan08g1295 Tan-Chr8:45121274 2.80E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28150 PF00249 Myb_DNA-binding 2.10E-08 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1295 - - - 0.0