Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1335 ATGTGGTTTGTAACTACAGCCTGCTTGGATCCTGAGAACTTTAAGGAGTTTAAACTTGTTAAGCGTACAAAGCTGAGCCATAATGTGGCGAAATTCACTTTTATGCTTCCTAAGCCTGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACCCCAACTACTCTGGACTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCACATCATTTTCGGGAAATGCGTATTGGGGACCATCTTGCTGTAAAGGGACCAAAGGGACGTTTTAAGTATCAACCTGGACAAGTTCGTGCATTTGGAATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAACGACAAGACAAAGATTCACCTTATTTACGCCAATGTTACACTTGAAGATATTCTTTTGAAGGAAGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAGATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGAATGGTGGCGTTGGCTTTGTGTCCAAGGAAATGATTCAAGCGCATTGCCCTGCACCTGCCTCTGACATTCAGATTCTACGGTGCGGTCCGCCACCGATGAACAAGGCCATGGCTGCCCACCTTGATGCTCTTGGATACACACCAGAAATGCAGTTCCAATTCTAA 747 43.78 MWFVTTACLDPENFKEFKLVKRTKLSHNVAKFTFMLPKPDSILGLPIGQHLSCRGKDSQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDHLAVKGPKGRFKYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKIHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWNGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLDALGYTPEMQFQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51426404 51432146 + Tan0022785.2 Tan08g1335 761227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1335 248 Gene3D - 106 248 IPR039261 -
Tan08g1335 248 FunFam NADH-cytochrome b5 reductase 7 106 - -
Tan08g1335 248 Pfam Oxidoreductase NAD-binding domain 125 231 IPR001433 GO:0016491(InterPro)
Tan08g1335 248 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 218 226 IPR001709 GO:0016491(InterPro)
Tan08g1335 248 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 124 143 IPR001709 GO:0016491(InterPro)
Tan08g1335 248 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 162 173 IPR001709 GO:0016491(InterPro)
Tan08g1335 248 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 12 116 IPR017927 GO:0016491(InterPro)
Tan08g1335 248 PRINTS Cytochrome B5 reductase signature 124 143 - -
Tan08g1335 248 PRINTS Cytochrome B5 reductase signature 101 115 - -
Tan08g1335 248 PRINTS Cytochrome B5 reductase signature 162 173 - -
Tan08g1335 248 PRINTS Cytochrome B5 reductase signature 43 54 - -
Tan08g1335 248 PRINTS Cytochrome B5 reductase signature 65 72 - -
Tan08g1335 248 PRINTS Cytochrome B5 reductase signature 218 226 - -
Tan08g1335 248 FunFam NADH-cytochrome b5 reductase 106 248 - -
Tan08g1335 248 SUPERFAMILY Riboflavin synthase domain-like 8 117 IPR017938 -
Tan08g1335 248 Pfam Oxidoreductase FAD-binding domain 17 115 IPR008333 -
Tan08g1335 248 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 104 244 IPR039261 -
Tan08g1335 248 CDD cyt_b5_reduct_like 17 248 - -
Tan08g1335 248 Gene3D Translation factors 6 105 - -
Tan08g1335 248 PANTHER NADH-CYTOCHROME B5 REDUCTASE 8 248 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1335 Tan-Chr8:51426404 Tan08g1337 Tan-Chr8:51426404 3.00E-112 dispersed
Tan08g1334 Tan-Chr8:51426404 Tan08g1335 Tan-Chr8:51426404 2.60E-141 tandem
Tan08g1335 Tan-Chr8:51426404 Tan08g1336 Tan-Chr8:51426404 3.00E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1335 K00326 - csv:101212931 460.685