Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1414 ATGGAAAATCTTGGCGATGACCCAAATAGTCCAAATCACAGCTCCGAGAGGACGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCTCCCAAGGATGAGACTGTTAGAATTAGAAAGTTGCTTGAGAAATTTGGCTCTGTTGGGGATGCCAATGTTTTCTACTGGTTTCAGAACCGCCGCTCTCGGTCTCGCCGCCGCCAGCGCCAGCTGCAGGCGGCAGCAAGTCACCAGGGTGGCGGCGGTACTGCAATTTATTATGACGGTGGTGGTGGCAGCGGCGGCAGTAGTAGTAGTGGTGTTATGAATTTCGCTGCTTCCTCTTCTTACCTTGGAGGAGGAGGGTCTTCCTCCTCAGCTTCTGGGGTTGGAGGAGATGGTGATGGCGGTGGCGGTGGCGATTTTTCGATGTCAGGTCATATGGGTTTCTCTGAAGTTGATCAACAGATGGTTGTAACCCCGTCGTTTTGCGCTTCGGAAACCTCAAGCTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTTCCAAAAGGACCATTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTGGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCACTGCACAGTTTGCAGCATGGTGAAAGCTATTTTCTGTTATTAGATTACGTGGGTTCCATTTCAAAACCAATTGGCAATGAGAGAAGTAGTCCATATGTCTTATAA 798 47.74 MENLGDDPNSPNHSSERTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGGGTAIYYDGGGGSGGSSSSGVMNFAASSSYLGGGGSSSSASGVGGDGDGGGGGDFSMSGHMGFSEVDQQMVVTPSFCASETSSLEFQSGYIIIFINGVPTEVPKGPLDMKAMFGQETVLVHSSGLPVLTNEFGISLHSLQHGESYFLLLDYVGSISKPIGNERSSPYVL 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 57523258 57525038 - Tan0002601.1 Tan08g1414 761306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1414 265 Gene3D - 22 89 - -
Tan08g1414 265 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677(InterPro)
Tan08g1414 265 PANTHER WUSCHEL-RELATED HOMEOBOX 11 8 244 IPR044558 GO:0003700(InterPro)|GO:0048830(InterPro)
Tan08g1414 265 MobiDBLite consensus disorder prediction 1 26 - -
Tan08g1414 265 SUPERFAMILY Homeodomain-like 16 90 IPR009057 -
Tan08g1414 265 MobiDBLite consensus disorder prediction 1 16 - -
Tan08g1414 265 MobiDBLite consensus disorder prediction 132 154 - -
Tan08g1414 265 FunFam WUSCHEL-related homeobox 11 22 89 - -
Tan08g1414 265 SMART HOX_1 20 87 IPR001356 GO:0003677(InterPro)
Tan08g1414 265 Pfam Homeodomain 22 82 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1414 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2537 Tan-Chr3:78633749 Tan08g1414 Tan-Chr8:57523258 2.10E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g89 . . . . Bpe04g01358 Bpe03g01065 Bma04g01433 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0444 Cone19ag0299 . . . . Blo07g01201 Blo09g00348 Bda03g01494 Bda05g00996 . . . . Sed02g0298 . . . Cma14g00454 . Car14g00419 Cpe03g00402 . Bhi11g02705 Tan08g1414 Cmetu04g2331 Lac10g2499 . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28160 PF00046 Homeodomain 7.00E-13 CL0123 Tan TF